Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13590

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,594,233	-	flhD	LU632_RS13580	0.86	-0.3
2,594,233	-	flhD	LU632_RS13580	0.86	-0.4
2,594,243	-	flhD	LU632_RS13580	0.89	-0.0
2,594,250	+				-3.0
2,594,251	-				+0.2
2,594,251	-				+0.5
2,594,251	-				+0.3
2,594,254	+				+1.6
2,594,261	+				+0.6
2,594,261	+				-0.6
2,594,261	+				+0.1
2,594,262	-				+1.2
2,594,262	-				+0.9
2,594,294	+				-0.2
2,594,294	+				+0.2
2,594,295	-				+0.2
2,594,295	-				-1.0
2,594,295	-				+0.1
2,594,348	+				+1.2
2,594,348	+				+0.3
2,594,348	+				+1.3
2,594,348	+				-0.3
2,594,349	-				-0.5
2,594,349	-				+0.3
2,594,380	-				-0.1
2,594,428	+				+0.3
2,594,437	+				-0.3
2,594,437	+				-2.8
2,594,443	+				+0.2
2,594,443	+				-0.7
2,594,444	-				+0.0
2,594,461	+				-0.4
2,594,461	+				-0.0
2,594,462	-				-1.8
2,594,522	-				-1.2
2,594,549	+				-0.7
2,594,549	+				+0.2
2,594,549	+				+0.8
2,594,550	-				+0.5
2,594,550	-				-0.6
2,594,598	-				-1.3
2,595,186	+				-2.2
2,595,270	-				+1.0
2,595,324	+				-0.1
2,595,325	-				-1.4
2,595,327	-				+0.6
2,595,336	+				-0.1
2,595,337	-				+0.3
2,595,337	-				-0.7
2,595,337	-				-0.2
2,595,495	+	otsA	LU632_RS13590	0.20	+2.0
2,595,495	+	otsA	LU632_RS13590	0.20	+0.2
2,595,496	-	otsA	LU632_RS13590	0.20	-1.2
2,595,498	-	otsA	LU632_RS13590	0.21	+0.1
2,595,498	-	otsA	LU632_RS13590	0.21	+0.6
2,595,609	-	otsA	LU632_RS13590	0.29	-1.4
2,595,635	+	otsA	LU632_RS13590	0.30	+1.9
2,595,639	+	otsA	LU632_RS13590	0.31	+2.5
2,595,646	+	otsA	LU632_RS13590	0.31	-1.0
2,595,780	-	otsA	LU632_RS13590	0.41	+1.3
2,595,807	+	otsA	LU632_RS13590	0.43	-0.9
2,595,808	-	otsA	LU632_RS13590	0.43	-2.4
2,595,813	-	otsA	LU632_RS13590	0.43	-0.4
2,596,068	-	otsA	LU632_RS13590	0.61	-0.3
2,596,140	+	otsA	LU632_RS13590	0.66	-0.4
2,596,141	-	otsA	LU632_RS13590	0.66	+0.9
2,596,211	+	otsA	LU632_RS13590	0.71	-1.6
2,596,211	+	otsA	LU632_RS13590	0.71	+0.1
2,596,211	+	otsA	LU632_RS13590	0.71	-0.8
2,596,212	-	otsA	LU632_RS13590	0.71	+2.9
2,596,228	-	otsA	LU632_RS13590	0.72	+0.4
2,596,228	-	otsA	LU632_RS13590	0.72	+0.5
2,596,379	+	otsA	LU632_RS13590	0.83	-0.1
2,596,379	+	otsA	LU632_RS13590	0.83	-1.1
2,596,418	+	otsA	LU632_RS13590	0.86	-0.2
2,596,418	+	otsA	LU632_RS13590	0.86	-0.3
2,596,426	-	otsA	LU632_RS13590	0.87	-0.2
2,596,530	+				+0.3
2,596,594	+				+0.1
2,596,594	+				-0.4
2,596,594	+				-0.2
2,596,595	-				+1.7
2,596,595	-				-1.1
2,596,595	-				+0.7
2,596,615	-				+0.8
2,596,652	+				+0.8
2,596,653	-				+0.0
2,596,659	-				+0.6
2,596,823	-	otsB	LU632_RS13595	0.26	-2.0
2,596,846	+	otsB	LU632_RS13595	0.29	+2.2
2,596,847	-	otsB	LU632_RS13595	0.29	-1.2
2,596,847	-	otsB	LU632_RS13595	0.29	+1.3
2,596,995	+	otsB	LU632_RS13595	0.48	+0.7
2,597,067	-	otsB	LU632_RS13595	0.57	-0.4
2,597,349	+				-2.0
2,597,382	-				+1.5
2,597,383	+				-0.8
2,597,384	-				-2.8
2,597,416	+				+1.7
2,597,416	+				+1.1
2,597,416	+				-0.4
2,597,417	-				+1.4
2,597,417	-				+0.2
2,597,417	-				-0.2
2,597,417	-				+0.5
2,597,417	-				-0.1
2,597,431	+				+2.4
2,597,517	-				+0.7
2,597,586	+				-0.6