Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13185

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,514,957	-				+0.8
2,515,040	+		LU632_RS13180	0.20	+0.4
2,515,212	+		LU632_RS13180	0.50	-0.2
2,515,212	+		LU632_RS13180	0.50	-1.6
2,515,212	+		LU632_RS13180	0.50	-1.5
2,515,589	+				-0.6
2,515,592	+				-0.2
2,515,592	+				+0.8
2,515,593	-				-0.1
2,515,593	-				-1.3
2,515,611	+				-0.4
2,515,612	-				+2.0
2,515,618	+				-0.3
2,515,619	-				+0.2
2,515,624	-				+2.3
2,515,636	-				-0.1
2,515,671	+				+1.4
2,515,679	-				+2.2
2,515,679	-				+0.8
2,515,734	-				-0.3
2,515,811	-				-1.0
2,515,811	-				+0.4
2,515,813	+				+1.2
2,515,814	-				-0.4
2,515,816	+				+0.4
2,515,840	-				-0.4
2,515,869	-				+0.6
2,515,916	+				+0.4
2,515,967	+				-0.1
2,516,033	+	sdaA	LU632_RS13185	0.12	+0.9
2,516,072	-	sdaA	LU632_RS13185	0.15	-0.2
2,516,072	-	sdaA	LU632_RS13185	0.15	+0.5
2,516,289	+	sdaA	LU632_RS13185	0.31	+0.7
2,516,497	+	sdaA	LU632_RS13185	0.46	-0.3
2,516,498	-	sdaA	LU632_RS13185	0.47	+0.3
2,516,498	-	sdaA	LU632_RS13185	0.47	+1.2
2,516,507	+	sdaA	LU632_RS13185	0.47	-0.3
2,516,519	+	sdaA	LU632_RS13185	0.48	-0.0
2,516,641	+	sdaA	LU632_RS13185	0.57	-0.6
2,516,641	+	sdaA	LU632_RS13185	0.57	-1.3
2,516,642	-	sdaA	LU632_RS13185	0.57	-0.1
2,516,761	-	sdaA	LU632_RS13185	0.66	-0.4
2,516,839	-	sdaA	LU632_RS13185	0.72	+0.9
2,516,890	+	sdaA	LU632_RS13185	0.75	-0.5
2,516,891	-	sdaA	LU632_RS13185	0.75	-1.4
2,516,891	-	sdaA	LU632_RS13185	0.75	+0.8
2,516,897	-	sdaA	LU632_RS13185	0.76	-1.2
2,516,897	-	sdaA	LU632_RS13185	0.76	-0.0
2,516,897	-	sdaA	LU632_RS13185	0.76	-1.0
2,516,897	-	sdaA	LU632_RS13185	0.76	-3.1
2,516,987	+	sdaA	LU632_RS13185	0.82	-0.7
2,516,987	+	sdaA	LU632_RS13185	0.82	+0.2
2,516,987	+	sdaA	LU632_RS13185	0.82	-1.4
2,516,988	-	sdaA	LU632_RS13185	0.82	+0.2
2,517,054	-	sdaA	LU632_RS13185	0.87	-0.9
2,517,128	+				+0.3
2,517,148	-				-0.4
2,517,209	+				-1.4
2,517,209	+				-2.0
2,517,261	+				+3.5
2,517,261	+				-0.8
2,517,334	-				-1.5
2,517,366	-				-0.2
2,517,391	+				-1.6
2,517,391	+				+0.2
2,517,397	+				-1.4
2,517,404	-				+6.4
2,517,444	+				+0.9
2,517,444	+				+1.2
2,517,444	+				+0.2
2,517,531	-				+0.7
2,517,730	-		LU632_RS13190	0.17	-2.1
2,517,793	+		LU632_RS13190	0.21	-0.7
2,517,794	-		LU632_RS13190	0.21	+0.4
2,517,806	+		LU632_RS13190	0.21	-2.4
2,517,806	+		LU632_RS13190	0.21	-1.5
2,517,806	+		LU632_RS13190	0.21	-1.1
2,517,806	+		LU632_RS13190	0.21	-1.2
2,517,807	-		LU632_RS13190	0.21	+3.6
2,517,807	-		LU632_RS13190	0.21	-0.9
2,517,894	+		LU632_RS13190	0.27	-1.3
2,517,894	+		LU632_RS13190	0.27	+3.8
2,517,957	+		LU632_RS13190	0.31	-0.9
2,517,994	+		LU632_RS13190	0.33	+0.5
2,517,994	+		LU632_RS13190	0.33	+0.2
2,517,995	-		LU632_RS13190	0.33	+0.4
2,518,114	+		LU632_RS13190	0.41	+0.2
2,518,154	+		LU632_RS13190	0.44	-0.7