Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13075

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,494,972	-		LU632_RS13070	0.72	+4.0
2,494,996	+		LU632_RS13070	0.74	-0.4
2,495,016	-		LU632_RS13070	0.75	-1.0
2,495,046	-		LU632_RS13070	0.78	-0.0
2,495,141	+		LU632_RS13070	0.85	+0.3
2,495,142	-		LU632_RS13070	0.85	-0.5
2,495,285	-				-1.0
2,495,396	+				-0.3
2,495,398	+				+3.2
2,495,399	-				+0.2
2,495,430	+				-0.8
2,495,432	+				-0.1
2,495,432	+				+0.6
2,495,474	-				+0.9
2,495,694	+				-0.4
2,495,694	+				+1.2
2,495,724	+				-0.6
2,495,724	+				+0.2
2,495,725	-				+0.9
2,495,746	+				-0.7
2,495,847	+				-0.3
2,495,848	-				-0.7
2,495,875	-				+0.3
2,495,923	+				-0.7
2,495,950	-				+1.2
2,496,043	-		LU632_RS13075	0.13	+0.1
2,496,095	-		LU632_RS13075	0.17	+0.0
2,496,096	+		LU632_RS13075	0.17	-0.8
2,496,096	+		LU632_RS13075	0.17	-0.3
2,496,097	-		LU632_RS13075	0.17	-0.9
2,496,150	+		LU632_RS13075	0.20	+0.1
2,496,157	+		LU632_RS13075	0.21	+0.0
2,496,240	+		LU632_RS13075	0.26	-0.8
2,496,241	-		LU632_RS13075	0.26	+0.3
2,496,241	-		LU632_RS13075	0.26	-1.6
2,496,245	-		LU632_RS13075	0.26	-0.5
2,496,307	+		LU632_RS13075	0.30	+1.7
2,496,308	-		LU632_RS13075	0.31	+0.3
2,496,308	-		LU632_RS13075	0.31	-0.2
2,496,308	-		LU632_RS13075	0.31	-0.2
2,496,309	+		LU632_RS13075	0.31	+1.4
2,496,309	+		LU632_RS13075	0.31	-0.3
2,496,309	+		LU632_RS13075	0.31	+1.0
2,496,310	-		LU632_RS13075	0.31	-0.3
2,496,463	+		LU632_RS13075	0.41	+2.4
2,496,521	+		LU632_RS13075	0.44	+2.2
2,496,522	-		LU632_RS13075	0.44	+1.1
2,496,522	-		LU632_RS13075	0.44	+0.7
2,496,575	-		LU632_RS13075	0.48	-0.2
2,496,580	-		LU632_RS13075	0.48	-0.7
2,496,712	+		LU632_RS13075	0.57	-0.9
2,496,712	+		LU632_RS13075	0.57	+0.1
2,496,713	-		LU632_RS13075	0.57	-1.0
2,496,762	+		LU632_RS13075	0.60	+0.6
2,496,762	+		LU632_RS13075	0.60	+1.8
2,496,800	-		LU632_RS13075	0.63	+0.2
2,496,813	+		LU632_RS13075	0.63	-2.3
2,496,814	-		LU632_RS13075	0.63	-0.8
2,496,827	-		LU632_RS13075	0.64	-0.6
2,496,861	+		LU632_RS13075	0.67	-1.1
2,496,861	+		LU632_RS13075	0.67	-0.1
2,496,874	-		LU632_RS13075	0.67	-1.4
2,496,882	+		LU632_RS13075	0.68	+0.2
2,496,882	+		LU632_RS13075	0.68	+1.2
2,496,883	-		LU632_RS13075	0.68	-0.2
2,496,883	-		LU632_RS13075	0.68	-0.1
2,497,139	-		LU632_RS13075	0.85	+0.0
2,497,141	-		LU632_RS13075	0.85	+2.2
2,497,174	+		LU632_RS13075	0.87	+0.3
2,497,265	+				-0.3
2,497,337	+				+1.6
2,497,337	+				-0.5
2,497,338	-				-0.4
2,497,373	-				-1.5
2,497,425	-				+0.5
2,497,462	+				-2.5
2,497,462	+				+0.4
2,497,462	+				+1.2
2,497,462	+				-0.2
2,497,463	-				+0.7
2,497,463	-				-0.3
2,497,465	+				-1.8
2,497,465	+				+1.7
2,497,465	+				+0.5
2,497,466	-				-0.1
2,497,495	-				+0.0
2,497,560	+	fadR	LU632_RS13080	0.19	+0.1
2,497,602	+	fadR	LU632_RS13080	0.25	-0.4
2,497,602	+	fadR	LU632_RS13080	0.25	-0.4
2,497,603	-	fadR	LU632_RS13080	0.25	+0.3
2,497,656	+	fadR	LU632_RS13080	0.32	+0.6
2,497,697	-	fadR	LU632_RS13080	0.38	-0.8
2,497,714	+	fadR	LU632_RS13080	0.40	-0.4
2,497,717	-	fadR	LU632_RS13080	0.41	-2.2
2,497,717	-	fadR	LU632_RS13080	0.41	-0.3
2,497,816	+	fadR	LU632_RS13080	0.55	+1.7
2,497,816	+	fadR	LU632_RS13080	0.55	+0.9
2,497,817	-	fadR	LU632_RS13080	0.55	+0.6
2,497,897	+	fadR	LU632_RS13080	0.66	-0.4
2,497,985	+	fadR	LU632_RS13080	0.78	+1.2
2,497,985	+	fadR	LU632_RS13080	0.78	+0.5
2,498,095	-				+0.5
2,498,183	+				-1.6
2,498,348	+				+0.8