Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13050

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,490,059	+		LU632_RS13045	0.54	-0.1
2,490,059	+		LU632_RS13045	0.54	-2.3
2,490,059	+		LU632_RS13045	0.54	+1.3
2,490,060	-		LU632_RS13045	0.54	-0.2
2,490,060	-		LU632_RS13045	0.54	+0.6
2,490,060	-		LU632_RS13045	0.54	-1.0
2,490,092	-		LU632_RS13045	0.56	+0.9
2,490,092	-		LU632_RS13045	0.56	+1.1
2,490,119	+		LU632_RS13045	0.59	-2.0
2,490,119	+		LU632_RS13045	0.59	-0.4
2,490,119	+		LU632_RS13045	0.59	+0.4
2,490,119	+		LU632_RS13045	0.59	+0.7
2,490,120	-		LU632_RS13045	0.59	-0.8
2,490,120	-		LU632_RS13045	0.59	-1.6
2,490,120	-		LU632_RS13045	0.59	-2.2
2,490,451	+		LU632_RS13045	0.86	+0.4
2,490,451	+		LU632_RS13045	0.86	+1.2
2,490,452	-		LU632_RS13045	0.86	+1.9
2,490,601	-				+1.3
2,490,601	-				+0.6
2,490,716	-				+1.8
2,490,719	-				-1.8
2,490,751	+				-0.6
2,490,780	+				+3.0
2,490,819	-		LU632_RS13050	0.14	-0.8
2,490,874	+		LU632_RS13050	0.40	-1.2
2,490,881	+		LU632_RS13050	0.43	-0.3
2,490,882	-		LU632_RS13050	0.44	-1.0
2,490,915	+		LU632_RS13050	0.60	+0.2
2,491,175	+				+0.2
2,491,793	-		LU632_RS13055	0.57	-0.2
2,491,793	-		LU632_RS13055	0.57	+2.2
2,491,908	+		LU632_RS13055	0.66	-0.4