Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13030

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttnpA and LU632_RS13025 are separated by 85 nucleotidesLU632_RS13025 and LU632_RS13030 are separated by 100 nucleotidesLU632_RS13030 and LU632_RS13035 are separated by 1 nucleotides LU632_RS13020: tnpA - IS200/IS605 family transposase, at 2,484,898 to 2,485,302 tnpA LU632_RS13025: LU632_RS13025 - transposase, at 2,485,388 to 2,485,681 _RS13025 LU632_RS13030: LU632_RS13030 - helix-turn-helix domain-containing protein, at 2,485,782 to 2,486,195 _RS13030 LU632_RS13035: LU632_RS13035 - transposase, at 2,486,197 to 2,486,754 _RS13035 Position (kb) 2485 2486 2487Strain fitness (log2 ratio) -1 0 1 2at 2485.375 kb on - strandat 2486.192 kb on + strandat 2486.831 kb on - strandat 2486.981 kb on + strandat 2487.058 kb on + strandat 2487.119 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA
remove
2,485,375 - -0.4
2,486,192 + +2.2
2,486,831 - +1.4
2,486,981 + -0.1
2,487,058 + -0.7
2,487,119 - -0.5

Or see this region's nucleotide sequence