Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12980

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,474,904	-				+1.2
2,474,904	-				-0.4
2,474,945	+				-0.9
2,474,945	+				-0.1
2,474,946	-				+0.7
2,474,947	+				-0.3
2,474,947	+				-0.9
2,474,947	+				+0.5
2,474,983	+	ansA	LU632_RS12975	0.11	+1.7
2,475,184	+	ansA	LU632_RS12975	0.30	+1.7
2,475,185	-	ansA	LU632_RS12975	0.30	-0.1
2,475,334	+	ansA	LU632_RS12975	0.45	-1.1
2,475,334	+	ansA	LU632_RS12975	0.45	+0.4
2,475,334	+	ansA	LU632_RS12975	0.45	+0.3
2,475,427	+	ansA	LU632_RS12975	0.54	+0.2
2,475,428	-	ansA	LU632_RS12975	0.54	-0.9
2,475,428	-	ansA	LU632_RS12975	0.54	+1.7
2,475,520	-	ansA	LU632_RS12975	0.63	+0.1
2,475,520	-	ansA	LU632_RS12975	0.63	-1.2
2,475,520	-	ansA	LU632_RS12975	0.63	+1.1
2,475,611	-	ansA	LU632_RS12975	0.72	-0.2
2,475,645	+	ansA	LU632_RS12975	0.76	+0.2
2,475,672	+	ansA	LU632_RS12975	0.78	-0.0
2,475,676	+	ansA	LU632_RS12975	0.79	-1.5
2,475,677	-	ansA	LU632_RS12975	0.79	-0.9
2,475,677	-	ansA	LU632_RS12975	0.79	-0.5
2,475,709	-	ansA	LU632_RS12975	0.82	+0.4
2,475,712	+	ansA	LU632_RS12975	0.82	+1.1
2,475,713	-	ansA	LU632_RS12975	0.82	-0.4
2,475,713	-	ansA	LU632_RS12975	0.82	+2.6
2,475,772	+	ansA	LU632_RS12975	0.88	+0.1
2,475,810	+				-1.9
2,475,813	+				+1.0
2,476,251	+	pncA	LU632_RS12980	0.56	+1.9
2,476,264	+	pncA	LU632_RS12980	0.58	+0.3
2,476,277	-	pncA	LU632_RS12980	0.60	-0.9
2,476,388	+	pncA	LU632_RS12980	0.78	-0.1
2,476,563	+		LU632_RS12985	0.14	-0.9
2,476,564	-		LU632_RS12985	0.14	-0.5
2,476,567	-		LU632_RS12985	0.15	+1.6
2,476,567	-		LU632_RS12985	0.15	-0.9
2,476,629	+		LU632_RS12985	0.37	-2.0
2,476,630	-		LU632_RS12985	0.38	+0.1
2,476,648	-		LU632_RS12985	0.44	+0.5
2,476,761	-		LU632_RS12985	0.85	-0.4
2,476,786	-				+0.5
2,476,803	+				+0.1
2,476,823	+				-0.8
2,476,823	+				+0.0
2,476,849	-				-0.0
2,476,862	+	msrB	LU632_RS12990	0.13	+1.3
2,476,863	-	msrB	LU632_RS12990	0.13	-0.4
2,476,863	-	msrB	LU632_RS12990	0.13	+1.0
2,476,865	+	msrB	LU632_RS12990	0.14	-0.2
2,476,865	+	msrB	LU632_RS12990	0.14	-1.3
2,476,865	+	msrB	LU632_RS12990	0.14	+0.9
2,476,866	-	msrB	LU632_RS12990	0.14	-0.4
2,476,866	-	msrB	LU632_RS12990	0.14	+0.0
2,477,011	+	msrB	LU632_RS12990	0.49	+2.3
2,477,041	+	msrB	LU632_RS12990	0.56	+1.3
2,477,042	-	msrB	LU632_RS12990	0.57	-2.6
2,477,042	-	msrB	LU632_RS12990	0.57	+1.7
2,477,089	+	msrB	LU632_RS12990	0.68	-0.4
2,477,090	-	msrB	LU632_RS12990	0.68	+0.6
2,477,090	-	msrB	LU632_RS12990	0.68	-1.0
2,477,090	-	msrB	LU632_RS12990	0.68	+0.7
2,477,121	-	msrB	LU632_RS12990	0.76	-0.4
2,477,121	-	msrB	LU632_RS12990	0.76	+0.6
2,477,161	+	msrB	LU632_RS12990	0.86	-1.0
2,477,162	-	msrB	LU632_RS12990	0.86	-1.9
2,477,253	-				-1.0
2,477,301	+				-0.6
2,477,375	+				-0.2
2,477,442	-				+1.5
2,477,475	-				-0.9
2,477,475	-				+0.3