Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12755

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,425,590	+		LU632_RS12750	0.43	-0.3
2,425,636	+		LU632_RS12750	0.49	-0.2
2,425,637	-		LU632_RS12750	0.49	-0.6
2,425,714	+		LU632_RS12750	0.57	-2.1
2,425,714	+		LU632_RS12750	0.57	-0.2
2,425,714	+		LU632_RS12750	0.57	+2.5
2,425,885	+		LU632_RS12750	0.76	+0.4
2,425,885	+		LU632_RS12750	0.76	+0.1
2,425,886	-		LU632_RS12750	0.76	+1.1
2,425,971	-		LU632_RS12750	0.86	+0.9
2,426,011	+				+0.1
2,426,012	-				-0.4
2,426,012	-				+2.4
2,426,012	-				+1.6
2,426,012	-				-0.1
2,426,012	-				-0.4
2,426,012	-				-0.0
2,426,016	-				-0.2
2,426,035	+				-1.2
2,426,036	-				+1.4
2,426,052	+				+1.1
2,426,126	+				+2.0
2,426,140	+				-0.7
2,426,356	-				+0.6
2,426,473	+				+0.5
2,426,473	+				-0.6
2,426,473	+				+1.2
2,426,474	-				-0.0
2,426,474	-				-0.7
2,426,507	+				+2.6
2,426,604	-		LU632_RS12755	0.15	-0.5
2,426,604	-		LU632_RS12755	0.15	-2.0
2,426,605	+		LU632_RS12755	0.15	+0.6
2,426,605	+		LU632_RS12755	0.15	+0.1
2,426,606	-		LU632_RS12755	0.15	-0.4
2,426,648	+		LU632_RS12755	0.18	-1.7
2,426,648	+		LU632_RS12755	0.18	-0.1
2,426,649	-		LU632_RS12755	0.18	-1.2
2,426,687	+		LU632_RS12755	0.20	-1.0
2,426,687	+		LU632_RS12755	0.20	+0.9
2,426,690	+		LU632_RS12755	0.21	-0.2
2,426,691	-		LU632_RS12755	0.21	-0.2
2,426,691	-		LU632_RS12755	0.21	-1.7
2,426,857	+		LU632_RS12755	0.31	+1.0
2,426,858	-		LU632_RS12755	0.31	+3.6
2,426,858	-		LU632_RS12755	0.31	-0.5
2,426,861	+		LU632_RS12755	0.32	+3.6
2,426,983	+		LU632_RS12755	0.39	-2.5
2,426,984	-		LU632_RS12755	0.39	+1.6
2,427,073	+		LU632_RS12755	0.45	-1.1
2,427,100	-		LU632_RS12755	0.47	-0.4
2,427,121	+		LU632_RS12755	0.48	-0.9
2,427,121	+		LU632_RS12755	0.48	-0.7
2,427,240	+		LU632_RS12755	0.56	-0.3
2,427,240	+		LU632_RS12755	0.56	-1.4
2,427,240	+		LU632_RS12755	0.56	-0.5
2,427,240	+		LU632_RS12755	0.56	-0.7
2,427,240	+		LU632_RS12755	0.56	-0.4
2,427,241	-		LU632_RS12755	0.56	-1.1
2,427,243	-		LU632_RS12755	0.56	-1.1
2,427,243	-		LU632_RS12755	0.56	-1.2
2,427,454	+		LU632_RS12755	0.70	-0.9
2,427,454	+		LU632_RS12755	0.70	+0.7
2,427,455	-		LU632_RS12755	0.70	-0.5
2,427,514	-		LU632_RS12755	0.73	+0.2
2,427,632	+		LU632_RS12755	0.81	-0.4
2,427,633	-		LU632_RS12755	0.81	-0.7
2,427,656	+		LU632_RS12755	0.82	+0.6
2,427,657	-		LU632_RS12755	0.83	-0.5
2,427,657	-		LU632_RS12755	0.83	-0.0
2,427,729	+		LU632_RS12755	0.87	+2.4
2,427,755	+		LU632_RS12755	0.89	-1.2
2,427,780	+				+0.6
2,427,796	+				+1.1
2,427,797	-				+0.3
2,427,866	+				-0.7
2,427,955	+				-0.2
2,427,991	-				+1.1
2,427,991	-				+1.1
2,428,019	+				-0.9
2,428,027	+				+1.1
2,428,027	+				+1.1
2,428,084	-				+0.3
2,428,208	+	trpD	LU632_RS12760	0.18	-0.6
2,428,208	+	trpD	LU632_RS12760	0.18	-0.1
2,428,218	-	trpD	LU632_RS12760	0.18	+0.7
2,428,278	+	trpD	LU632_RS12760	0.22	+0.1
2,428,278	+	trpD	LU632_RS12760	0.22	-1.3
2,428,278	+	trpD	LU632_RS12760	0.22	+1.1
2,428,278	+	trpD	LU632_RS12760	0.22	+0.9
2,428,278	+	trpD	LU632_RS12760	0.22	+0.5
2,428,279	-	trpD	LU632_RS12760	0.22	+0.2
2,428,279	-	trpD	LU632_RS12760	0.22	+0.9
2,428,279	-	trpD	LU632_RS12760	0.22	+1.4
2,428,279	-	trpD	LU632_RS12760	0.22	-0.9
2,428,279	-	trpD	LU632_RS12760	0.22	-0.4
2,428,283	-	trpD	LU632_RS12760	0.22	+0.0
2,428,283	-	trpD	LU632_RS12760	0.22	+0.6
2,428,283	-	trpD	LU632_RS12760	0.22	+0.1
2,428,348	-	trpD	LU632_RS12760	0.26	+0.1
2,428,508	+	trpD	LU632_RS12760	0.36	+0.5
2,428,529	-	trpD	LU632_RS12760	0.38	-1.6
2,428,564	-	trpD	LU632_RS12760	0.40	+1.1
2,428,599	+	trpD	LU632_RS12760	0.42	-0.1
2,428,600	-	trpD	LU632_RS12760	0.42	+0.1
2,428,783	+	trpD	LU632_RS12760	0.54	-0.3
2,428,783	+	trpD	LU632_RS12760	0.54	-0.9
2,428,784	-	trpD	LU632_RS12760	0.54	-0.7
2,428,784	-	trpD	LU632_RS12760	0.54	+0.8
2,428,786	+	trpD	LU632_RS12760	0.54	+0.0
2,428,786	+	trpD	LU632_RS12760	0.54	+0.8
2,428,786	+	trpD	LU632_RS12760	0.54	-0.7
2,428,786	+	trpD	LU632_RS12760	0.54	+1.5
2,428,789	+	trpD	LU632_RS12760	0.54	-1.4