Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12305

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,337,072	-				-1.1
2,337,113	+				+1.9
2,337,114	-				+0.1
2,337,160	+				-0.5
2,337,194	+				-0.3
2,337,227	-				-0.1
2,337,267	+	bioD	LU632_RS12300	0.15	-1.1
2,337,282	+	bioD	LU632_RS12300	0.18	+2.0
2,337,297	+	bioD	LU632_RS12300	0.20	-2.0
2,337,298	-	bioD	LU632_RS12300	0.20	-1.2
2,337,312	+	bioD	LU632_RS12300	0.22	-0.3
2,337,313	-	bioD	LU632_RS12300	0.22	+0.6
2,337,313	-	bioD	LU632_RS12300	0.22	-1.2
2,337,409	+	bioD	LU632_RS12300	0.37	+0.6
2,337,550	+	bioD	LU632_RS12300	0.58	-0.1
2,337,550	+	bioD	LU632_RS12300	0.58	-2.3
2,337,659	-	bioD	LU632_RS12300	0.74	+0.9
2,337,664	+	bioD	LU632_RS12300	0.75	-0.2
2,337,676	-	bioD	LU632_RS12300	0.76	+0.2
2,337,821	-				+1.6
2,337,821	-				-1.2
2,337,904	-				+0.2
2,337,954	-				+0.3
2,338,109	+				+1.2
2,338,110	-				-1.0
2,338,124	-				-1.4
2,338,320	+		LU632_RS12305	0.20	+0.5
2,338,332	+		LU632_RS12305	0.21	-1.8
2,338,332	+		LU632_RS12305	0.21	-1.7
2,338,332	+		LU632_RS12305	0.21	+1.2
2,338,332	+		LU632_RS12305	0.21	+1.2
2,338,332	+		LU632_RS12305	0.21	+1.0
2,338,332	+		LU632_RS12305	0.21	+1.6
2,338,332	+		LU632_RS12305	0.21	-2.5
2,338,333	-		LU632_RS12305	0.21	-0.4
2,338,333	-		LU632_RS12305	0.21	+0.2
2,338,333	-		LU632_RS12305	0.21	+2.2
2,338,333	-		LU632_RS12305	0.21	+1.3
2,338,333	-		LU632_RS12305	0.21	+0.9
2,338,333	-		LU632_RS12305	0.21	+0.2
2,338,334	+		LU632_RS12305	0.22	-1.1
2,338,334	+		LU632_RS12305	0.22	+0.1
2,338,334	+		LU632_RS12305	0.22	-1.5
2,338,354	-		LU632_RS12305	0.23	+3.3
2,338,393	+		LU632_RS12305	0.26	-0.2
2,338,393	+		LU632_RS12305	0.26	+0.2
2,338,394	-		LU632_RS12305	0.26	-0.6
2,338,472	-		LU632_RS12305	0.33	+0.2
2,338,473	+		LU632_RS12305	0.33	-1.6
2,338,521	-		LU632_RS12305	0.37	-1.2
2,338,721	+		LU632_RS12305	0.53	-1.5
2,338,765	+		LU632_RS12305	0.57	+0.5
2,338,765	+		LU632_RS12305	0.57	-0.2
2,338,765	+		LU632_RS12305	0.57	-1.4
2,338,766	-		LU632_RS12305	0.57	+0.1
2,338,766	-		LU632_RS12305	0.57	-1.2
2,338,767	+		LU632_RS12305	0.57	+3.0
2,338,767	+		LU632_RS12305	0.57	+1.2
2,338,768	-		LU632_RS12305	0.57	+1.6
2,338,768	-		LU632_RS12305	0.57	-0.8
2,338,768	-		LU632_RS12305	0.57	-1.0
2,338,768	-		LU632_RS12305	0.57	+0.7
2,338,905	+		LU632_RS12305	0.68	+0.1
2,338,906	-		LU632_RS12305	0.68	-0.1
2,339,004	+		LU632_RS12305	0.77	-0.8
2,339,207	+				-0.7
2,339,303	+				+0.6
2,339,369	+				-1.2
2,339,370	-				-0.4
2,339,400	-				+0.8
2,339,400	-				+1.5
2,339,400	-				+0.7
2,339,401	+				+1.4
2,339,401	+				-0.4
2,339,402	-				-2.2
2,339,452	-		LU632_RS12310	0.20	-1.0
2,339,546	+		LU632_RS12310	0.76	+1.3
2,339,708	+				+2.2
2,339,764	+				+0.6
2,339,805	+		LU632_RS12315	0.13	+0.9
2,339,949	-		LU632_RS12315	0.26	-1.0
2,340,098	+		LU632_RS12315	0.40	-1.2
2,340,098	+		LU632_RS12315	0.40	-0.4
2,340,098	+		LU632_RS12315	0.40	+3.0
2,340,102	+		LU632_RS12315	0.40	-1.8
2,340,103	-		LU632_RS12315	0.40	-0.9
2,340,103	-		LU632_RS12315	0.40	+0.2
2,340,103	-		LU632_RS12315	0.40	+0.5
2,340,103	-		LU632_RS12315	0.40	+1.5
2,340,103	-		LU632_RS12315	0.40	-1.4
2,340,103	-		LU632_RS12315	0.40	+0.8
2,340,167	-		LU632_RS12315	0.46	+0.7
2,340,167	-		LU632_RS12315	0.46	-1.2
2,340,232	+		LU632_RS12315	0.52	-0.7