Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11680

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,219,688	+	rhaM	LU632_RS11670	0.61	+0.9
2,219,757	+	rhaM	LU632_RS11670	0.83	-0.5
2,219,809	+				+1.1
2,219,809	+				-1.5
2,219,810	-				-0.6
2,219,810	-				-1.1
2,219,812	-				-0.9
2,219,891	+	rhaD	LU632_RS11675	0.11	-0.7
2,219,960	+	rhaD	LU632_RS11675	0.19	+0.7
2,220,188	-	rhaD	LU632_RS11675	0.46	+3.0
2,220,328	+	rhaD	LU632_RS11675	0.63	+1.2
2,220,328	+	rhaD	LU632_RS11675	0.63	+0.3
2,220,328	+	rhaD	LU632_RS11675	0.63	-1.3
2,220,331	-	rhaD	LU632_RS11675	0.63	-0.0
2,220,401	+	rhaD	LU632_RS11675	0.71	+0.9
2,220,584	+				+0.0
2,220,584	+				+1.8
2,220,584	+				+0.9
2,220,584	+				+0.1
2,220,584	+				+0.8
2,220,584	+				+0.5
2,220,585	-				-0.2
2,220,585	-				-0.3
2,220,679	+				-1.0
2,220,680	-				-0.2
2,220,688	-				-0.2
2,220,737	-				+0.1
2,220,803	-		LU632_RS11680	0.12	+0.8
2,220,849	+		LU632_RS11680	0.16	-0.5
2,220,850	-		LU632_RS11680	0.16	+0.2
2,220,850	-		LU632_RS11680	0.16	-1.3
2,220,906	-		LU632_RS11680	0.20	+0.7
2,221,056	+		LU632_RS11680	0.32	+0.5
2,221,072	+		LU632_RS11680	0.33	-0.3
2,221,072	+		LU632_RS11680	0.33	-0.7
2,221,072	+		LU632_RS11680	0.33	+1.4
2,221,072	+		LU632_RS11680	0.33	+0.3
2,221,072	+		LU632_RS11680	0.33	-0.9
2,221,199	-		LU632_RS11680	0.44	-0.8
2,221,214	+		LU632_RS11680	0.45	+1.0
2,221,244	+		LU632_RS11680	0.47	-0.3
2,221,275	+		LU632_RS11680	0.50	-0.4
2,221,296	-		LU632_RS11680	0.51	+1.3
2,221,296	-		LU632_RS11680	0.51	-0.4
2,221,330	-		LU632_RS11680	0.54	+0.9
2,221,653	+		LU632_RS11680	0.80	-0.3
2,221,715	-		LU632_RS11680	0.85	-0.5
2,221,909	+				-0.3
2,221,909	+				+0.1
2,221,909	+				-0.2
2,221,909	+				+0.5
2,221,909	+				-0.5
2,221,909	+				+0.1
2,221,909	+				-0.9
2,221,909	+				-1.3
2,221,909	+				-1.9
2,221,909	+				+2.1
2,221,910	-				-0.0
2,221,910	-				+2.7
2,221,910	-				+1.4
2,221,910	-				+0.5
2,221,910	-				-0.5
2,221,910	-				-0.1
2,221,910	-				+1.4
2,221,910	-				+0.2
2,221,910	-				-1.3
2,221,910	-				+0.8
2,221,913	+				-0.7
2,221,913	+				-2.6
2,221,913	+				+0.3
2,221,914	-				-2.1
2,221,914	-				+0.4
2,221,914	-				+0.7
2,221,914	-				+3.8
2,221,914	-				+0.5
2,221,989	+				+0.2
2,221,990	-				-0.9
2,222,046	-				-0.3
2,222,063	-	rhaB	LU632_RS11685	0.11	-0.9
2,222,153	+	rhaB	LU632_RS11685	0.17	+1.1
2,222,231	+	rhaB	LU632_RS11685	0.22	-0.4
2,222,232	-	rhaB	LU632_RS11685	0.22	+1.6
2,222,232	-	rhaB	LU632_RS11685	0.22	-1.2
2,222,232	-	rhaB	LU632_RS11685	0.22	-0.5
2,222,232	-	rhaB	LU632_RS11685	0.22	-2.6
2,222,242	-	rhaB	LU632_RS11685	0.23	+0.1
2,222,242	-	rhaB	LU632_RS11685	0.23	+1.3
2,222,344	+	rhaB	LU632_RS11685	0.30	-2.2
2,222,444	+	rhaB	LU632_RS11685	0.37	-1.4
2,222,468	+	rhaB	LU632_RS11685	0.38	-1.1
2,222,534	+	rhaB	LU632_RS11685	0.43	-0.1
2,222,534	+	rhaB	LU632_RS11685	0.43	+0.5
2,222,535	-	rhaB	LU632_RS11685	0.43	-2.4
2,222,535	-	rhaB	LU632_RS11685	0.43	+0.4
2,222,535	-	rhaB	LU632_RS11685	0.43	+1.2
2,222,565	+	rhaB	LU632_RS11685	0.45	-1.4
2,222,603	-	rhaB	LU632_RS11685	0.47	+0.8
2,222,603	-	rhaB	LU632_RS11685	0.47	-0.1
2,222,752	+	rhaB	LU632_RS11685	0.58	-0.5
2,222,845	+	rhaB	LU632_RS11685	0.64	+2.1
2,222,848	+	rhaB	LU632_RS11685	0.64	-0.9
2,222,848	+	rhaB	LU632_RS11685	0.64	-0.7
2,222,848	+	rhaB	LU632_RS11685	0.64	+0.3
2,222,848	+	rhaB	LU632_RS11685	0.64	+2.1
2,222,849	-	rhaB	LU632_RS11685	0.64	-0.2
2,222,850	+	rhaB	LU632_RS11685	0.64	+0.3
2,222,851	-	rhaB	LU632_RS11685	0.64	-0.3
2,222,851	-	rhaB	LU632_RS11685	0.64	+0.1