Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11295

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,157,530	+		LU632_RS11285	0.86	+0.1
2,157,589	+				+0.3
2,157,589	+				-1.5
2,157,590	-				+0.2
2,157,590	-				-1.5
2,157,590	-				-0.1
2,157,590	-				-1.4
2,157,591	+				+1.7
2,157,591	+				-0.4
2,157,593	+				+0.2
2,157,594	-				-0.7
2,157,594	-				+1.1
2,157,744	+		LU632_RS11290	0.26	+0.4
2,157,787	-		LU632_RS11290	0.31	+0.2
2,157,914	-		LU632_RS11290	0.48	+0.4
2,157,975	+		LU632_RS11290	0.56	+0.6
2,157,975	+		LU632_RS11290	0.56	+0.1
2,158,021	-		LU632_RS11290	0.63	-0.5
2,158,027	-		LU632_RS11290	0.63	-0.9
2,158,142	-		LU632_RS11290	0.79	-2.1
2,158,203	-		LU632_RS11290	0.87	+2.6
2,158,352	+				+1.2
2,158,412	+				+0.6
2,158,419	+				-0.5
2,158,424	+				+0.2
2,158,454	+				+0.1
2,158,589	+		LU632_RS11295	0.13	-0.2
2,158,616	+		LU632_RS11295	0.17	+2.8
2,158,617	-		LU632_RS11295	0.17	+0.4
2,158,718	+		LU632_RS11295	0.32	+1.8
2,158,745	+		LU632_RS11295	0.36	-1.0
2,158,745	+		LU632_RS11295	0.36	+1.1
2,158,745	+		LU632_RS11295	0.36	+0.3
2,158,745	+		LU632_RS11295	0.36	-0.1
2,158,746	-		LU632_RS11295	0.36	-0.7
2,158,746	-		LU632_RS11295	0.36	-1.1
2,158,746	-		LU632_RS11295	0.36	-0.6
2,158,746	-		LU632_RS11295	0.36	-1.8
2,158,746	-		LU632_RS11295	0.36	-0.3
2,158,746	-		LU632_RS11295	0.36	-0.7
2,158,746	-		LU632_RS11295	0.36	-2.4
2,158,746	-		LU632_RS11295	0.36	+0.7
2,158,833	-		LU632_RS11295	0.49	+0.9
2,158,919	+		LU632_RS11295	0.62	-0.3
2,158,996	-		LU632_RS11295	0.73	+0.8
2,159,135	+				-0.8
2,159,136	-				+1.1
2,159,184	+				+0.6
2,159,245	+				-0.2
2,159,245	+				+1.1
2,159,246	-				-2.5
2,159,325	+				-0.8
2,159,423	-		LU632_RS11300	0.25	-0.3
2,159,513	+		LU632_RS11300	0.40	+1.1
2,159,518	-		LU632_RS11300	0.41	-0.7
2,159,518	-		LU632_RS11300	0.41	-0.0
2,159,518	-		LU632_RS11300	0.41	-0.8
2,159,580	-		LU632_RS11300	0.52	+0.6
2,159,613	+		LU632_RS11300	0.58	-0.6
2,159,614	-		LU632_RS11300	0.58	+0.3
2,159,631	+		LU632_RS11300	0.61	-0.3
2,159,631	+		LU632_RS11300	0.61	+0.2
2,159,632	-		LU632_RS11300	0.61	-0.0
2,159,632	-		LU632_RS11300	0.61	-0.0
2,159,635	+		LU632_RS11300	0.62	-0.1
2,159,694	+		LU632_RS11300	0.72	-0.2
2,159,695	-		LU632_RS11300	0.72	-0.2
2,159,699	-		LU632_RS11300	0.73	-1.2
2,159,853	+				-2.1
2,159,854	-				-2.3
2,159,854	-				-0.0
2,159,854	-				+0.2
2,159,860	+				-0.4
2,159,950	+				-0.1
2,159,951	-				+0.4
2,159,951	-				+1.6
2,159,972	+				+0.3
2,159,972	+				+1.1
2,160,026	-				+1.8
2,160,098	+				-0.2
2,160,126	+				+1.2