Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11240

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,148,718	+		LU632_RS11235	0.51	-0.2
2,148,718	+		LU632_RS11235	0.51	+0.5
2,148,719	-		LU632_RS11235	0.51	-0.9
2,148,727	-		LU632_RS11235	0.55	-0.4
2,148,771	-		LU632_RS11235	0.73	+0.5
2,148,858	-				+0.9
2,148,884	+				+0.2
2,148,884	+				-2.8
2,148,885	-				+1.7
2,148,885	-				-0.5
2,148,950	+				+0.4
2,148,966	-				-0.5
2,148,987	-				-2.0
2,148,987	-				-1.3
2,149,033	+				+1.3
2,149,047	-				+1.3
2,149,074	-				+0.1
2,149,138	-				-0.6
2,149,139	+				+1.7
2,149,141	+				-0.2
2,149,141	+				-1.0
2,149,141	+				-1.3
2,149,142	-				-0.3
2,149,162	-				+1.9
2,149,325	-				+0.5
2,149,388	+				+0.1
2,149,390	+				-0.6
2,149,410	-				+0.8
2,149,415	-				-0.9
2,149,512	+				-1.0
2,149,512	+				-0.7
2,149,512	+				-0.1
2,149,514	+				-0.7
2,149,515	-				-0.7
2,149,515	-				-0.7
2,149,516	+				+0.6
2,149,516	+				-0.5
2,149,549	+				-0.5
2,150,308	+	slyB	LU632_RS11245	0.21	-0.5
2,150,310	+	slyB	LU632_RS11245	0.21	+1.1
2,150,311	-	slyB	LU632_RS11245	0.21	-0.5
2,150,311	-	slyB	LU632_RS11245	0.21	-0.1
2,150,375	-	slyB	LU632_RS11245	0.35	-0.9
2,150,451	+	slyB	LU632_RS11245	0.51	-1.9
2,150,551	-	slyB	LU632_RS11245	0.72	+1.7
2,150,556	-	slyB	LU632_RS11245	0.74	+0.3
2,150,595	-	slyB	LU632_RS11245	0.82	-1.9
2,150,656	+				-0.8
2,150,656	+				+0.1
2,150,668	-				+1.5
2,150,741	+				-0.5
2,150,741	+				-0.3
2,150,802	+				-0.3
2,150,838	+				-0.5
2,150,932	-				+0.7
2,150,985	-				+1.6