Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11170

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,134,942	+	pykF	LU632_RS11145	0.90	+0.6
2,135,006	-				-2.6
2,135,095	-				-0.3
2,135,101	+				+0.4
2,135,240	-		LU632_RS11150	0.76	-1.7
2,135,324	+				+0.1
2,135,374	+				-0.4
2,135,452	+		LU632_RS11155	0.13	+0.3
2,135,510	+		LU632_RS11155	0.88	-1.8
2,135,882	-				-1.3
2,135,890	+				+0.5
2,135,933	-				+0.2
2,135,997	+		LU632_RS11170	0.12	-0.1
2,136,025	+		LU632_RS11170	0.14	+1.0
2,136,037	+		LU632_RS11170	0.15	+1.1
2,136,050	-		LU632_RS11170	0.16	-0.8
2,136,178	-		LU632_RS11170	0.25	-1.3
2,136,381	-		LU632_RS11170	0.40	-0.6
2,136,506	+		LU632_RS11170	0.49	-0.5
2,136,507	-		LU632_RS11170	0.49	-3.0
2,136,507	-		LU632_RS11170	0.49	+0.1
2,136,507	-		LU632_RS11170	0.49	+0.3
2,136,507	-		LU632_RS11170	0.49	-0.9
2,136,526	+		LU632_RS11170	0.50	+0.9
2,136,526	+		LU632_RS11170	0.50	+0.9
2,136,787	-		LU632_RS11170	0.69	-2.2
2,136,819	+		LU632_RS11170	0.72	-0.9
2,136,888	+		LU632_RS11170	0.77	-0.8
2,136,888	+		LU632_RS11170	0.77	-0.7
2,136,921	-		LU632_RS11170	0.79	-0.8
2,136,933	+		LU632_RS11170	0.80	-2.4
2,136,984	+		LU632_RS11170	0.84	-0.5
2,136,984	+		LU632_RS11170	0.84	+0.5
2,136,984	+		LU632_RS11170	0.84	+0.1
2,136,985	-		LU632_RS11170	0.84	+0.7
2,136,985	-		LU632_RS11170	0.84	-1.8
2,136,985	-		LU632_RS11170	0.84	+0.3
2,136,996	-		LU632_RS11170	0.85	+1.6
2,136,996	-		LU632_RS11170	0.85	+1.5
2,137,036	+		LU632_RS11170	0.87	+0.3
2,137,036	+		LU632_RS11170	0.87	-0.5
2,137,160	+				+2.1
2,137,162	+				-1.0
2,137,211	+				-0.5
2,137,212	-				-1.9
2,137,212	-				-0.4
2,137,212	-				-0.6
2,137,272	-				-1.1
2,137,272	-				-0.4
2,137,272	-				-0.7
2,137,343	+				-0.9
2,137,368	-				+0.5
2,137,368	-				-1.3
2,137,368	-				+1.5
2,137,372	+				+2.2
2,137,386	+				-1.1
2,137,387	-				-0.7
2,137,431	+				-1.3
2,138,137	+				-0.4
2,138,138	-				-0.6