Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10845

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,068,824	-				+3.6
2,068,825	+				+0.7
2,068,826	-				-0.3
2,068,826	-				+2.1
2,068,850	-				+0.5
2,068,850	-				+0.1
2,068,934	-				-0.0
2,068,992	+				+0.8
2,068,992	+				+0.3
2,068,993	-				-0.2
2,068,993	-				-0.8
2,069,032	-				-0.5
2,069,068	+				-0.9
2,069,068	+				-0.6
2,069,068	+				+1.1
2,069,069	-				+1.1
2,069,085	-				+1.4
2,069,139	+				+0.8
2,069,140	-				+4.2
2,069,159	+				-1.3
2,069,159	+				-0.1
2,069,159	+				-1.6
2,069,160	-				+0.6
2,069,194	+				-3.4
2,069,215	+				-0.3
2,069,347	+	osmE	LU632_RS10840	0.25	-0.5
2,069,348	-	osmE	LU632_RS10840	0.25	-0.4
2,069,348	-	osmE	LU632_RS10840	0.25	+1.4
2,069,437	-	osmE	LU632_RS10840	0.52	-0.9
2,069,440	-	osmE	LU632_RS10840	0.53	+1.1
2,069,470	+	osmE	LU632_RS10840	0.62	-0.8
2,069,471	-	osmE	LU632_RS10840	0.62	+0.7
2,069,474	+	osmE	LU632_RS10840	0.63	+0.3
2,069,474	+	osmE	LU632_RS10840	0.63	-0.9
2,069,475	-	osmE	LU632_RS10840	0.63	+0.9
2,069,475	-	osmE	LU632_RS10840	0.63	+1.2
2,069,475	-	osmE	LU632_RS10840	0.63	+1.1
2,069,478	-	osmE	LU632_RS10840	0.64	+0.6
2,069,478	-	osmE	LU632_RS10840	0.64	-0.3
2,069,478	-	osmE	LU632_RS10840	0.64	-1.0
2,069,494	-	osmE	LU632_RS10840	0.69	-0.3
2,069,506	+	osmE	LU632_RS10840	0.72	-0.0
2,069,518	+	osmE	LU632_RS10840	0.76	+0.3
2,069,518	+	osmE	LU632_RS10840	0.76	+0.2
2,069,519	-	osmE	LU632_RS10840	0.76	+1.5
2,069,520	+	osmE	LU632_RS10840	0.76	+0.5
2,069,545	+	osmE	LU632_RS10840	0.84	+1.8
2,069,600	-				+0.3
2,069,600	-				-0.2
2,069,600	-				+0.6
2,069,600	-				+0.5
2,069,660	+				+0.4
2,069,809	+				+0.5
2,069,810	-				-1.2
2,069,810	-				+0.7
2,069,810	-				-0.7
2,069,811	+				-3.0
2,069,811	+				-0.1
2,069,812	-				-0.6
2,069,847	-				-2.5
2,069,860	-		LU632_RS10845	0.12	+0.6
2,069,875	+		LU632_RS10845	0.16	-0.3
2,069,876	-		LU632_RS10845	0.16	+0.6
2,069,876	-		LU632_RS10845	0.16	+0.7
2,069,893	+		LU632_RS10845	0.20	+0.5
2,069,968	+		LU632_RS10845	0.40	-0.5
2,069,968	+		LU632_RS10845	0.40	-0.4
2,069,969	-		LU632_RS10845	0.41	-1.5
2,069,973	-		LU632_RS10845	0.42	-0.9
2,069,993	-		LU632_RS10845	0.47	-1.1
2,069,993	-		LU632_RS10845	0.47	-0.9
2,069,995	+		LU632_RS10845	0.48	-0.5
2,069,996	-		LU632_RS10845	0.48	-0.4
2,069,996	-		LU632_RS10845	0.48	+0.9
2,069,996	-		LU632_RS10845	0.48	+0.5
2,069,996	-		LU632_RS10845	0.48	+1.3
2,070,013	+		LU632_RS10845	0.53	-0.7
2,070,014	-		LU632_RS10845	0.53	+2.8
2,070,017	-		LU632_RS10845	0.54	+0.5
2,070,061	-		LU632_RS10845	0.65	+0.0
2,070,151	+		LU632_RS10845	0.90	+0.5
2,070,172	-				-0.5
2,070,176	-				+1.1
2,070,278	+				-0.8
2,070,279	-				+4.3
2,070,284	+				+0.5
2,070,284	+				-0.2
2,070,377	-				+0.9
2,070,386	+				-1.4
2,070,386	+				-1.7
2,070,387	-				-1.3
2,070,575	-		LU632_RS10850	0.17	-1.0
2,070,593	-		LU632_RS10850	0.19	+1.1
2,070,593	-		LU632_RS10850	0.19	-0.1
2,070,593	-		LU632_RS10850	0.19	+0.9
2,070,725	+		LU632_RS10850	0.30	+1.7
2,070,737	-		LU632_RS10850	0.31	-0.5
2,070,761	+		LU632_RS10850	0.33	+0.1
2,070,762	-		LU632_RS10850	0.33	+0.6
2,070,762	-		LU632_RS10850	0.33	-2.1
2,070,801	+		LU632_RS10850	0.37	+0.1
2,070,873	+		LU632_RS10850	0.43	+1.1
2,070,874	-		LU632_RS10850	0.43	-1.2
2,070,874	-		LU632_RS10850	0.43	-0.1
2,071,111	+		LU632_RS10850	0.63	+1.0
2,071,128	+		LU632_RS10850	0.65	+1.0
2,071,131	+		LU632_RS10850	0.65	-1.8
2,071,132	-		LU632_RS10850	0.65	+1.6