Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10515

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,010,200	+	rcsA	LU632_RS10510	0.55	+1.5
2,010,544	-				+1.8
2,010,906	+				+1.4
2,010,913	+				+0.5
2,010,994	-				+0.1
2,011,129	+				+0.6
2,011,177	+				+0.1
2,011,234	-	fliR	LU632_RS10515	0.13	-0.6
2,011,237	+	fliR	LU632_RS10515	0.13	-0.4
2,011,412	+	fliR	LU632_RS10515	0.36	-0.3
2,011,453	-	fliR	LU632_RS10515	0.41	+0.1
2,011,479	+	fliR	LU632_RS10515	0.44	+0.8
2,011,480	-	fliR	LU632_RS10515	0.44	-0.7
2,011,684	+	fliR	LU632_RS10515	0.70	-1.0
2,011,684	+	fliR	LU632_RS10515	0.70	+0.1
2,011,685	-	fliR	LU632_RS10515	0.70	+0.0
2,011,756	+	fliR	LU632_RS10515	0.79	-0.4
2,011,768	-	fliR	LU632_RS10515	0.81	+1.4
2,011,768	-	fliR	LU632_RS10515	0.81	-0.1
2,011,768	-	fliR	LU632_RS10515	0.81	+0.9
2,011,768	-	fliR	LU632_RS10515	0.81	+0.8
2,011,801	-	fliR	LU632_RS10515	0.85	-1.4
2,011,803	+	fliR	LU632_RS10515	0.85	-0.5
2,011,807	-	fliR	LU632_RS10515	0.86	-0.5
2,011,837	+	fliR	LU632_RS10515	0.90	+1.1
2,011,837	+	fliR	LU632_RS10515	0.90	-0.6
2,011,837	+	fliR	LU632_RS10515	0.90	-1.2
2,011,870	+				-1.5
2,011,912	+				-1.1
2,011,943	+				-0.4
2,011,944	-	fliQ	LU632_RS10520	0.10	-0.1
2,011,956	+	fliQ	LU632_RS10520	0.14	+0.6
2,011,957	-	fliQ	LU632_RS10520	0.15	+1.7
2,011,957	-	fliQ	LU632_RS10520	0.15	-0.7
2,011,958	+	fliQ	LU632_RS10520	0.15	+0.3
2,011,958	+	fliQ	LU632_RS10520	0.15	+1.2
2,011,959	-	fliQ	LU632_RS10520	0.16	+0.3
2,011,960	+	fliQ	LU632_RS10520	0.16	+0.7
2,011,961	-	fliQ	LU632_RS10520	0.16	-1.0
2,011,961	-	fliQ	LU632_RS10520	0.16	-0.4
2,011,977	+	fliQ	LU632_RS10520	0.22	+1.1
2,012,034	-	fliQ	LU632_RS10520	0.43	+1.1
2,012,160	+				+0.5
2,012,161	-				-0.4
2,012,214	+				+1.3
2,012,251	+				-0.8
2,012,251	+				-0.0
2,012,329	+				-0.7
2,012,360	+				+0.4
2,012,364	+				+0.4
2,012,365	-				-0.2
2,012,365	-				-1.3
2,012,403	-	fliP	LU632_RS10525	0.10	-1.9
2,012,416	-	fliP	LU632_RS10525	0.12	-0.6
2,012,416	-	fliP	LU632_RS10525	0.12	+0.1
2,012,416	-	fliP	LU632_RS10525	0.12	+0.4
2,012,417	+	fliP	LU632_RS10525	0.12	-0.5
2,012,546	-	fliP	LU632_RS10525	0.30	-0.3
2,012,546	-	fliP	LU632_RS10525	0.30	+0.3
2,012,561	+	fliP	LU632_RS10525	0.32	+0.8
2,012,561	+	fliP	LU632_RS10525	0.32	-0.2
2,012,562	-	fliP	LU632_RS10525	0.32	+0.1
2,012,654	+	fliP	LU632_RS10525	0.44	-0.3
2,012,655	-	fliP	LU632_RS10525	0.44	+1.5
2,012,765	+	fliP	LU632_RS10525	0.59	+0.3
2,012,768	+	fliP	LU632_RS10525	0.60	-0.4
2,012,769	-	fliP	LU632_RS10525	0.60	+0.6
2,012,802	+	fliP	LU632_RS10525	0.64	-1.5
2,012,802	+	fliP	LU632_RS10525	0.64	+0.3
2,012,861	+	fliP	LU632_RS10525	0.73	+1.5