Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10470

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
2,001,926	+		LU632_RS10465	0.28	-1.1
2,001,927	-		LU632_RS10465	0.28	+0.9
2,002,051	-		LU632_RS10465	0.56	+0.3
2,002,111	+		LU632_RS10465	0.70	-1.6
2,002,140	-		LU632_RS10465	0.77	+1.1
2,002,588	+				+1.2
2,003,424	-				-1.3
2,003,427	+				-1.5
2,003,495	+				-1.5
2,003,516	-				-0.3
2,003,516	-				+0.5
2,003,540	-				+0.8
2,003,540	-				+0.3
2,003,547	+				+0.2
2,003,619	-		LU632_RS10475	0.16	+0.1
2,003,687	+		LU632_RS10475	0.26	-0.5
2,003,688	-		LU632_RS10475	0.26	-1.0
2,003,688	-		LU632_RS10475	0.26	+1.1
2,003,747	-		LU632_RS10475	0.35	-0.4
2,003,955	+		LU632_RS10475	0.66	-0.4
2,004,036	+		LU632_RS10475	0.79	-1.1
2,004,036	+		LU632_RS10475	0.79	-1.0
2,004,048	-		LU632_RS10475	0.80	+1.1
2,004,084	+		LU632_RS10475	0.86	-1.7
2,004,085	-		LU632_RS10475	0.86	-0.5
2,004,086	+		LU632_RS10475	0.86	-0.1
2,004,086	+		LU632_RS10475	0.86	-0.2
2,004,086	+		LU632_RS10475	0.86	-0.5
2,004,087	-		LU632_RS10475	0.86	-0.1
2,004,087	-		LU632_RS10475	0.86	+1.1
2,004,166	-				-2.2
2,004,206	+				+0.5
2,004,206	+				-0.2
2,004,207	-				-0.3
2,004,207	-				-1.0
2,004,303	+				+1.8
2,004,318	+				-2.9
2,004,321	+				-0.2
2,004,321	+				+0.0