Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10455

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,998,063	+				+0.0
1,998,375	+				-1.2
1,998,563	-				-0.5
1,998,791	+				-0.1
1,999,170	+		LU632_RS10455	0.20	-0.7
1,999,205	-		LU632_RS10455	0.22	-2.0
1,999,367	+		LU632_RS10455	0.28	-2.1
1,999,440	+		LU632_RS10455	0.31	-0.4
1,999,464	+		LU632_RS10455	0.32	-0.6
1,999,465	-		LU632_RS10455	0.32	-2.6
1,999,465	-		LU632_RS10455	0.32	+0.4
1,999,467	-		LU632_RS10455	0.32	-1.1
1,999,596	+		LU632_RS10455	0.37	-1.1
1,999,731	+		LU632_RS10455	0.42	+0.6
1,999,732	-		LU632_RS10455	0.42	+2.1
1,999,734	-		LU632_RS10455	0.43	-0.9
1,999,742	-		LU632_RS10455	0.43	-0.7
1,999,781	-		LU632_RS10455	0.44	+1.7
1,999,817	+		LU632_RS10455	0.46	+0.3
1,999,818	-		LU632_RS10455	0.46	-1.2
1,999,883	+		LU632_RS10455	0.48	+0.2
1,999,884	-		LU632_RS10455	0.48	+0.2
1,999,884	-		LU632_RS10455	0.48	-0.9
2,000,015	+		LU632_RS10455	0.54	-1.2
2,000,015	+		LU632_RS10455	0.54	-0.2
2,000,023	+		LU632_RS10455	0.54	-0.5
2,000,023	+		LU632_RS10455	0.54	-0.0
2,000,024	-		LU632_RS10455	0.54	-2.3
2,000,024	-		LU632_RS10455	0.54	-0.6
2,000,024	-		LU632_RS10455	0.54	-0.7
2,000,027	+		LU632_RS10455	0.54	+1.3
2,000,161	-		LU632_RS10455	0.59	-0.3
2,000,161	-		LU632_RS10455	0.59	-0.9
2,000,193	+		LU632_RS10455	0.61	+2.1
2,000,335	+		LU632_RS10455	0.66	+1.5
2,000,335	+		LU632_RS10455	0.66	-0.9
2,000,336	-		LU632_RS10455	0.66	+0.1
2,000,454	-		LU632_RS10455	0.71	-0.2
2,000,522	-		LU632_RS10455	0.73	-1.1
2,000,582	+		LU632_RS10455	0.76	-2.4
2,000,646	+		LU632_RS10455	0.78	+1.1
2,000,646	+		LU632_RS10455	0.78	+1.0
2,000,647	-		LU632_RS10455	0.78	+3.3
2,000,647	-		LU632_RS10455	0.78	-0.1
2,001,047	+				-0.2
2,001,047	+				-0.4
2,001,047	+				-0.5
2,001,047	+				-0.8
2,001,048	-				+5.0
2,001,048	-				+0.1
2,001,048	-				-0.1
2,001,048	-				-2.1
2,001,048	-				-1.8
2,001,048	-				-1.5
2,001,106	+				-0.1
2,001,107	-				-1.4
2,001,216	-				+0.1
2,001,926	+		LU632_RS10465	0.28	-1.1
2,001,927	-		LU632_RS10465	0.28	+0.9
2,002,051	-		LU632_RS10465	0.56	+0.3
2,002,111	+		LU632_RS10465	0.70	-1.6
2,002,140	-		LU632_RS10465	0.77	+1.1