Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10005

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,913,547	+		LU632_RS10000	0.54	-1.0
1,913,547	+		LU632_RS10000	0.54	-1.9
1,913,548	-		LU632_RS10000	0.54	-1.2
1,913,613	+		LU632_RS10000	0.58	-0.1
1,913,614	-		LU632_RS10000	0.58	-0.7
1,913,614	-		LU632_RS10000	0.58	+0.9
1,913,624	+		LU632_RS10000	0.59	-0.9
1,913,712	+		LU632_RS10000	0.64	-1.5
1,913,712	+		LU632_RS10000	0.64	-1.2
1,913,712	+		LU632_RS10000	0.64	-0.9
1,913,791	+		LU632_RS10000	0.68	-1.9
1,913,791	+		LU632_RS10000	0.68	+0.3
1,913,792	-		LU632_RS10000	0.68	-0.6
1,913,792	-		LU632_RS10000	0.68	+1.3
1,913,841	+		LU632_RS10000	0.71	+1.1
1,913,889	+		LU632_RS10000	0.73	-0.5
1,913,909	+		LU632_RS10000	0.74	+1.4
1,913,910	-		LU632_RS10000	0.74	-1.9
1,913,910	-		LU632_RS10000	0.74	-0.9
1,913,932	-		LU632_RS10000	0.76	+0.1
1,914,044	+		LU632_RS10000	0.82	-0.7
1,914,045	-		LU632_RS10000	0.82	-0.8
1,914,080	+		LU632_RS10000	0.84	+0.6
1,914,123	+		LU632_RS10000	0.86	-0.5
1,914,139	+		LU632_RS10000	0.87	-0.5
1,914,140	+		LU632_RS10000	0.87	+0.0
1,914,140	+		LU632_RS10000	0.87	+0.1
1,914,141	-		LU632_RS10000	0.87	-0.6
1,914,141	-		LU632_RS10000	0.87	-1.3
1,914,141	-		LU632_RS10000	0.87	-1.3
1,914,280	-				-1.2
1,914,281	+				+0.6
1,914,281	+				+0.4
1,914,282	-				-2.1
1,914,282	-				+1.1
1,914,282	-				+0.1
1,914,324	-				-0.8
1,914,372	-				+1.7
1,914,389	+				+1.0
1,914,409	-				+0.5
1,914,409	-				-1.0
1,914,559	+	matP	LU632_RS10005	0.10	-0.8
1,914,559	+	matP	LU632_RS10005	0.10	-1.0
1,914,560	-	matP	LU632_RS10005	0.10	-0.2
1,914,602	-	matP	LU632_RS10005	0.19	-1.7
1,914,602	-	matP	LU632_RS10005	0.19	+1.0
1,914,633	-	matP	LU632_RS10005	0.26	-1.5
1,914,809	+	matP	LU632_RS10005	0.62	+0.1
1,914,809	+	matP	LU632_RS10005	0.62	-0.9
1,914,810	-	matP	LU632_RS10005	0.63	+0.1
1,914,810	-	matP	LU632_RS10005	0.63	+0.8
1,914,846	+	matP	LU632_RS10005	0.70	-0.5
1,914,846	+	matP	LU632_RS10005	0.70	-2.0
1,914,847	-	matP	LU632_RS10005	0.70	-0.7
1,914,866	+	matP	LU632_RS10005	0.74	+1.2
1,914,876	-	matP	LU632_RS10005	0.77	-0.7
1,914,939	-	matP	LU632_RS10005	0.90	-0.7
1,914,950	+				+0.2
1,914,951	-				-1.3
1,915,007	+				-1.4
1,915,023	-				-0.6
1,915,087	+				-0.1
1,915,149	+				-2.0
1,915,151	+				-1.7
1,915,152	-				-1.8
1,915,154	+				-0.5