Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09205

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,732,502	+		LU632_RS09200	0.35	-1.0
1,732,503	-		LU632_RS09200	0.35	-0.7
1,732,503	-		LU632_RS09200	0.35	-1.1
1,732,571	-		LU632_RS09200	0.42	+0.6
1,732,572	+		LU632_RS09200	0.42	-1.1
1,732,572	+		LU632_RS09200	0.42	+0.2
1,732,572	+		LU632_RS09200	0.42	-1.1
1,732,572	+		LU632_RS09200	0.42	+0.8
1,732,573	-		LU632_RS09200	0.42	+0.3
1,732,711	-		LU632_RS09200	0.54	-0.2
1,732,711	-		LU632_RS09200	0.54	+0.3
1,732,817	+		LU632_RS09200	0.64	-0.2
1,732,817	+		LU632_RS09200	0.64	+0.4
1,732,871	-		LU632_RS09200	0.68	-0.7
1,732,897	-		LU632_RS09200	0.71	-0.6
1,732,897	-		LU632_RS09200	0.71	-1.9
1,732,901	+		LU632_RS09200	0.71	-0.1
1,733,059	+		LU632_RS09200	0.85	+0.6
1,733,060	-		LU632_RS09200	0.85	-2.1
1,733,060	-		LU632_RS09200	0.85	-0.5
1,733,403	+				-0.2
1,733,404	-				+1.0
1,733,423	+				-0.2
1,733,457	+				+3.1
1,733,457	+				+1.1
1,733,457	+				-1.8
1,733,457	+				-1.3
1,733,457	+				-0.2
1,733,458	-				+0.1
1,733,458	-				+0.4
1,733,458	-				-0.6
1,733,458	-				-0.3
1,733,498	-		LU632_RS09205	0.15	-3.0
1,733,589	-		LU632_RS09205	0.27	+2.2
1,733,673	+		LU632_RS09205	0.39	-0.2
1,733,674	-		LU632_RS09205	0.39	-1.2
1,733,674	-		LU632_RS09205	0.39	+0.8
1,733,718	+		LU632_RS09205	0.46	+0.1
1,733,719	-		LU632_RS09205	0.46	-0.6
1,733,721	-		LU632_RS09205	0.46	-0.7
1,733,790	+		LU632_RS09205	0.56	+0.7
1,733,830	+		LU632_RS09205	0.61	+0.9
1,733,834	+		LU632_RS09205	0.62	+0.4
1,733,834	+		LU632_RS09205	0.62	+2.3
1,733,835	-		LU632_RS09205	0.62	+1.6
1,733,835	-		LU632_RS09205	0.62	-1.5
1,733,873	+		LU632_RS09205	0.67	-1.3
1,733,874	-		LU632_RS09205	0.68	-1.2
1,733,913	+		LU632_RS09205	0.73	+0.5
1,733,913	+		LU632_RS09205	0.73	-2.4
1,733,913	+		LU632_RS09205	0.73	+0.1
1,733,913	+		LU632_RS09205	0.73	+0.1
1,733,914	-		LU632_RS09205	0.73	+0.3
1,733,914	-		LU632_RS09205	0.73	+0.8
1,733,916	-		LU632_RS09205	0.73	+1.5
1,734,215	+				+4.2
1,734,229	+				+1.3
1,734,231	+				-0.2
1,734,231	+				+0.3
1,734,231	+				-0.3
1,734,231	+				-0.1
1,734,232	-				+0.1
1,734,421	+				-0.4
1,734,421	+				+1.0
1,734,422	-				+0.7
1,734,422	-				+0.7
1,734,431	+				+0.2
1,734,439	+				+1.3
1,734,596	-				+1.7
1,734,616	-				+0.6
1,734,616	-				+3.3
1,734,619	-				+0.8
1,734,619	-				-0.2
1,734,682	-				+0.8
1,734,682	-				+0.3
1,734,828	+				+0.0
1,734,828	+				+0.0
1,734,841	+				+0.3
1,734,842	-				-0.9
1,734,882	+		LU632_RS09210	0.14	-1.5
1,734,883	-		LU632_RS09210	0.14	-1.1
1,734,883	-		LU632_RS09210	0.14	+1.7
1,734,883	-		LU632_RS09210	0.14	+1.3
1,734,883	-		LU632_RS09210	0.14	-1.9
1,734,883	-		LU632_RS09210	0.14	+0.4
1,734,944	+		LU632_RS09210	0.30	-0.3
1,734,944	+		LU632_RS09210	0.30	-0.1
1,734,944	+		LU632_RS09210	0.30	+1.0
1,734,944	+		LU632_RS09210	0.30	+3.0
1,734,945	-		LU632_RS09210	0.30	-0.2
1,734,945	-		LU632_RS09210	0.30	+1.4
1,734,945	-		LU632_RS09210	0.30	-0.8
1,734,953	-		LU632_RS09210	0.32	-0.1
1,734,953	-		LU632_RS09210	0.32	-0.2
1,734,954	+		LU632_RS09210	0.32	+4.7
1,734,954	+		LU632_RS09210	0.32	-1.2
1,734,955	-		LU632_RS09210	0.33	+0.3
1,734,991	+		LU632_RS09210	0.42	-1.2
1,735,055	-		LU632_RS09210	0.59	-0.5
1,735,062	-		LU632_RS09210	0.60	+0.3
1,735,064	+		LU632_RS09210	0.61	-0.5
1,735,065	-		LU632_RS09210	0.61	+0.3
1,735,091	+		LU632_RS09210	0.68	+0.5