Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08975

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,691,934	+		LU632_RS08965	0.16	+0.3
1,691,986	+		LU632_RS08965	0.31	+0.6
1,691,986	+		LU632_RS08965	0.31	+2.5
1,691,987	-		LU632_RS08965	0.31	+0.7
1,691,987	-		LU632_RS08965	0.31	-0.5
1,691,987	-		LU632_RS08965	0.31	+1.0
1,692,034	-		LU632_RS08965	0.44	+0.4
1,692,045	+		LU632_RS08965	0.48	-0.3
1,692,045	+		LU632_RS08965	0.48	-1.2
1,692,046	-		LU632_RS08965	0.48	-0.1
1,692,046	-		LU632_RS08965	0.48	-0.9
1,692,275	+		LU632_RS08970	0.10	-0.5
1,692,275	+		LU632_RS08970	0.10	+1.3
1,692,498	+		LU632_RS08970	0.60	+1.3
1,692,608	+		LU632_RS08970	0.84	-0.7
1,692,608	+		LU632_RS08970	0.84	-2.2
1,692,608	+		LU632_RS08970	0.84	+0.7
1,692,609	-		LU632_RS08970	0.85	-2.2
1,692,643	+				+0.3
1,692,663	-				+1.7
1,692,663	-				-1.2
1,692,683	-				+0.6
1,692,703	+				-0.8
1,692,703	+				+0.3
1,692,775	-				+0.7
1,692,783	-				-2.7
1,692,829	+				+0.3
1,692,830	-				-0.3
1,692,901	+		LU632_RS08975	0.21	+0.1
1,692,947	+		LU632_RS08975	0.50	+1.2
1,692,948	-		LU632_RS08975	0.51	-1.0
1,692,948	-		LU632_RS08975	0.51	+1.5
1,692,973	+		LU632_RS08975	0.67	+0.1
1,692,985	-		LU632_RS08975	0.74	-1.4
1,693,134	-				+1.1
1,693,136	+				+0.6
1,693,148	-				-0.1
1,693,204	-				-1.1
1,693,248	+				+0.1
1,693,251	+	modA	LU632_RS08980	0.10	-1.3
1,693,251	+	modA	LU632_RS08980	0.10	-0.2
1,693,297	-	modA	LU632_RS08980	0.16	+0.2
1,693,297	-	modA	LU632_RS08980	0.16	-0.3
1,693,329	-	modA	LU632_RS08980	0.20	-1.5
1,693,329	-	modA	LU632_RS08980	0.20	-0.7
1,693,432	+	modA	LU632_RS08980	0.34	+2.0
1,693,432	+	modA	LU632_RS08980	0.34	-0.2
1,693,432	+	modA	LU632_RS08980	0.34	-0.4
1,693,433	-	modA	LU632_RS08980	0.34	+0.3
1,693,433	-	modA	LU632_RS08980	0.34	+0.8
1,693,538	+	modA	LU632_RS08980	0.47	+0.2
1,693,538	+	modA	LU632_RS08980	0.47	+0.3
1,693,538	+	modA	LU632_RS08980	0.47	+1.7
1,693,538	+	modA	LU632_RS08980	0.47	-0.7
1,693,538	+	modA	LU632_RS08980	0.47	+0.8
1,693,621	+	modA	LU632_RS08980	0.58	-2.3
1,693,621	+	modA	LU632_RS08980	0.58	-0.5
1,693,621	+	modA	LU632_RS08980	0.58	-0.2
1,693,622	-	modA	LU632_RS08980	0.58	+0.6
1,693,622	-	modA	LU632_RS08980	0.58	+0.2
1,693,622	-	modA	LU632_RS08980	0.58	-1.1
1,693,622	-	modA	LU632_RS08980	0.58	+0.6
1,693,622	-	modA	LU632_RS08980	0.58	+0.1
1,693,622	-	modA	LU632_RS08980	0.58	-2.4
1,693,622	-	modA	LU632_RS08980	0.58	-0.3
1,693,747	+	modA	LU632_RS08980	0.74	+0.4
1,693,812	+	modA	LU632_RS08980	0.83	-1.2
1,693,826	-	modA	LU632_RS08980	0.85	-0.3
1,693,886	+				-2.7
1,693,886	+				-0.5