Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08605

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,614,076	-	thiD	LU632_RS08590	0.76	-2.1
1,614,165	+	thiD	LU632_RS08590	0.87	+2.1
1,614,166	-	thiD	LU632_RS08590	0.87	-0.2
1,614,166	-	thiD	LU632_RS08590	0.87	+0.3
1,614,681	+				+0.8
1,614,682	-				+0.3
1,614,797	+				+1.4
1,614,797	+				+1.3
1,614,797	+				-0.4
1,614,798	-				-0.1
1,614,798	-				-1.2
1,614,863	+		LU632_RS08605	0.34	-1.3
1,614,864	-		LU632_RS08605	0.35	-0.3
1,614,898	+		LU632_RS08605	0.58	-0.4
1,614,898	+		LU632_RS08605	0.58	-1.0
1,614,943	-		LU632_RS08605	0.88	-0.9
1,615,024	-				+1.3
1,615,024	-				+0.3
1,615,033	-				-1.0
1,615,072	+				+1.0
1,615,185	-				+2.1
1,615,249	+		LU632_RS08610	0.18	+0.1
1,615,250	-		LU632_RS08610	0.19	-0.5
1,615,250	-		LU632_RS08610	0.19	-1.7
1,615,250	-		LU632_RS08610	0.19	+0.6
1,615,250	-		LU632_RS08610	0.19	-0.7
1,615,298	+		LU632_RS08610	0.26	-0.9
1,615,299	-		LU632_RS08610	0.26	-0.1
1,615,299	-		LU632_RS08610	0.26	-0.1
1,615,299	-		LU632_RS08610	0.26	-1.0
1,615,341	+		LU632_RS08610	0.32	+2.0
1,615,342	-		LU632_RS08610	0.32	-0.0
1,615,349	+		LU632_RS08610	0.33	+0.3
1,615,385	+		LU632_RS08610	0.39	+1.7
1,615,397	+		LU632_RS08610	0.40	+0.3
1,615,398	-		LU632_RS08610	0.41	-1.1
1,615,398	-		LU632_RS08610	0.41	-2.1
1,615,399	-		LU632_RS08610	0.41	-0.7
1,615,402	+		LU632_RS08610	0.41	-1.7
1,615,403	-		LU632_RS08610	0.41	+1.5
1,615,462	+		LU632_RS08610	0.50	+0.2
1,615,604	+		LU632_RS08610	0.71	+1.1
1,615,604	+		LU632_RS08610	0.71	+0.8
1,615,604	+		LU632_RS08610	0.71	-1.1
1,615,605	-		LU632_RS08610	0.71	+1.2
1,615,605	-		LU632_RS08610	0.71	-1.1
1,615,631	+		LU632_RS08610	0.75	+0.0
1,615,631	+		LU632_RS08610	0.75	+0.9
1,615,632	-		LU632_RS08610	0.75	-0.9
1,615,763	+				+0.9
1,615,763	+				-0.7
1,615,795	-				+0.4
1,615,800	+				-1.8
1,615,802	+				-1.0
1,615,807	-				+0.5
1,615,895	-		LU632_RS08615	0.28	-2.5
1,615,895	-		LU632_RS08615	0.28	-0.3
1,615,916	+		LU632_RS08615	0.34	+0.8
1,615,922	+		LU632_RS08615	0.36	+0.3