Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08410

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,577,005	-		LU632_RS08400	0.31	+0.6
1,577,005	-		LU632_RS08400	0.31	+2.9
1,577,005	-		LU632_RS08400	0.31	+2.7
1,577,005	-		LU632_RS08400	0.31	-0.7
1,577,005	-		LU632_RS08400	0.31	-0.3
1,577,046	+		LU632_RS08400	0.36	+1.8
1,577,063	+		LU632_RS08400	0.38	-1.0
1,577,112	-		LU632_RS08400	0.45	-0.8
1,577,114	+		LU632_RS08400	0.45	+0.3
1,577,115	-		LU632_RS08400	0.45	-0.8
1,577,152	-		LU632_RS08400	0.50	-0.1
1,577,152	-		LU632_RS08400	0.50	+1.3
1,577,307	-		LU632_RS08400	0.71	+0.9
1,577,307	-		LU632_RS08400	0.71	-1.2
1,577,307	-		LU632_RS08400	0.71	+2.2
1,577,307	-		LU632_RS08400	0.71	+0.1
1,577,524	+				+0.4
1,577,636	+				-1.0
1,577,636	+				+0.6
1,577,695	-				-0.3
1,577,735	+				-0.4
1,577,735	+				+0.2
1,577,735	+				+1.2
1,577,736	-				-0.7
1,577,754	+				+1.8
1,577,770	+				+0.1
1,577,770	+				-1.2
1,577,770	+				-0.9
1,577,771	-				+0.5
1,577,771	-				-1.4
1,577,771	-				+0.1
1,577,771	-				+0.2
1,577,772	+				-0.5
1,577,773	-				-1.7
1,577,787	+		LU632_RS08405	0.10	-2.0
1,577,906	+				+0.7
1,577,906	+				-0.3
1,577,913	-				-1.5
1,578,134	+		LU632_RS08410	0.53	-0.4
1,578,134	+		LU632_RS08410	0.53	-0.3
1,578,203	+		LU632_RS08410	0.67	+1.2
1,578,203	+		LU632_RS08410	0.67	+2.6
1,578,350	+				+1.9
1,578,351	-				-0.1
1,578,360	+				+0.2
1,578,361	-				+0.3
1,578,361	-				+0.3
1,578,361	-				+1.7
1,578,504	+				-0.7
1,578,506	+				+0.3
1,578,585	+				+0.2
1,578,586	-				+0.2
1,578,586	-				+0.2
1,578,698	+		LU632_RS08415	0.66	+0.7
1,578,779	-				-0.3
1,578,789	+				+0.6
1,578,836	-				-0.4
1,578,888	+				+2.0
1,578,888	+				+1.4
1,578,889	-				+1.0
1,579,021	-		LU632_RS08420	0.22	-0.7
1,579,021	-		LU632_RS08420	0.22	+0.7
1,579,023	-		LU632_RS08420	0.22	-0.1
1,579,023	-		LU632_RS08420	0.22	+0.1
1,579,023	-		LU632_RS08420	0.22	-0.1
1,579,056	+		LU632_RS08420	0.25	+0.9
1,579,067	+		LU632_RS08420	0.27	-3.6
1,579,068	-		LU632_RS08420	0.27	-0.4
1,579,070	-		LU632_RS08420	0.27	+1.2
1,579,089	+		LU632_RS08420	0.29	-0.9
1,579,090	-		LU632_RS08420	0.29	+0.7
1,579,090	-		LU632_RS08420	0.29	+0.2
1,579,090	-		LU632_RS08420	0.29	+0.2
1,579,170	-		LU632_RS08420	0.38	+0.0
1,579,218	+		LU632_RS08420	0.43	+1.2
1,579,253	+		LU632_RS08420	0.46	-0.4
1,579,254	-		LU632_RS08420	0.46	+0.6
1,579,254	-		LU632_RS08420	0.46	-0.6
1,579,293	-		LU632_RS08420	0.51	+1.8
1,579,294	+		LU632_RS08420	0.51	-0.1
1,579,305	+		LU632_RS08420	0.52	+0.6