Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07895

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,473,679	+	yfcF	LU632_RS07885	0.73	-0.3
1,473,684	+	yfcF	LU632_RS07885	0.74	+0.0
1,473,759	+	yfcF	LU632_RS07885	0.85	-1.1
1,473,779	+	yfcF	LU632_RS07885	0.88	+0.3
1,473,852	-				+1.7
1,473,913	-				-0.3
1,473,971	-				-0.6
1,473,971	-				-0.7
1,473,998	+				-1.5
1,474,006	+	yfcD	LU632_RS07890	0.11	-1.9
1,474,009	+	yfcD	LU632_RS07890	0.11	-0.6
1,474,009	+	yfcD	LU632_RS07890	0.11	-1.2
1,474,065	+	yfcD	LU632_RS07890	0.22	+0.1
1,474,066	-	yfcD	LU632_RS07890	0.22	-0.4
1,474,066	-	yfcD	LU632_RS07890	0.22	-0.4
1,474,066	-	yfcD	LU632_RS07890	0.22	+1.3
1,474,066	-	yfcD	LU632_RS07890	0.22	-1.2
1,474,130	+	yfcD	LU632_RS07890	0.34	-3.5
1,474,488	+				-0.3
1,474,489	-				+0.3
1,474,501	+				+0.7
1,474,502	-				-1.1
1,475,336	-		LU632_RS07900	0.12	+0.1
1,475,336	-		LU632_RS07900	0.12	+0.6
1,475,350	+		LU632_RS07900	0.15	-1.9
1,475,351	-		LU632_RS07900	0.15	-0.1
1,475,389	-		LU632_RS07900	0.22	+0.4
1,475,389	-		LU632_RS07900	0.22	+0.5
1,475,397	+		LU632_RS07900	0.24	+1.0
1,475,441	+		LU632_RS07900	0.32	+1.0
1,475,441	+		LU632_RS07900	0.32	+1.0
1,475,447	+		LU632_RS07900	0.33	-1.0
1,475,573	+		LU632_RS07900	0.58	+0.1
1,475,583	+		LU632_RS07900	0.60	-0.3
1,475,583	+		LU632_RS07900	0.60	-0.9
1,475,583	+		LU632_RS07900	0.60	-1.1
1,475,584	-		LU632_RS07900	0.60	-0.1
1,475,636	-		LU632_RS07900	0.70	-0.4
1,475,821	+				+0.4