Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06855

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,316,738	+				+0.9
1,316,784	+				-0.2
1,316,921	+				-0.3
1,317,066	-				-1.2
1,317,071	+				-2.4
1,317,093	+				-0.2
1,317,100	-				-0.2
1,317,141	-				-0.1
1,317,141	-				-1.8
1,317,148	-				+0.2
1,317,267	-				-0.7
1,317,736	-		LU632_RS06855	0.40	-0.3
1,317,736	-		LU632_RS06855	0.40	-0.5
1,317,781	-		LU632_RS06855	0.58	+0.1
1,317,781	-		LU632_RS06855	0.58	+2.3
1,317,812	-		LU632_RS06855	0.70	+2.3
1,317,862	+				-0.5
1,317,895	+				+0.2
1,317,937	-				-0.5
1,317,959	-				+0.3
1,317,959	-				+0.1
1,317,962	+				+0.5
1,317,962	+				-1.3
1,317,963	-				+1.5
1,317,966	-				-0.4
1,317,966	-				+0.3
1,318,002	-				+1.0
1,318,064	+		LU632_RS06860	0.24	-1.3
1,318,067	+		LU632_RS06860	0.24	-0.3
1,318,068	-		LU632_RS06860	0.25	-2.1
1,318,419	+				+1.8
1,318,527	+				+0.3
1,318,564	+				-0.3
1,318,580	-				-0.1
1,318,607	-				-1.1
1,318,613	-				-0.7
1,318,613	-				-0.8
1,318,625	+				+0.3
1,318,625	+				+0.6
1,318,625	+				+3.3
1,318,626	-				-0.0
1,318,626	-				+0.3
1,318,626	-				-0.3
1,318,644	-				+1.0
1,318,669	+				+0.2
1,318,725	+				+1.2
1,318,735	-				+1.2
1,318,735	-				-1.1
1,318,739	-				+1.3
1,318,763	-				-1.7
1,318,768	+				-2.5
1,318,810	+				+1.2