Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06040

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,145,412	+				+0.0
1,145,412	+				-0.9
1,145,490	+		LU632_RS06035	0.13	+0.6
1,145,574	+		LU632_RS06035	0.22	-1.0
1,145,711	+		LU632_RS06035	0.37	+2.1
1,145,712	-		LU632_RS06035	0.37	-0.4
1,145,910	+		LU632_RS06035	0.59	+1.0
1,145,911	-		LU632_RS06035	0.59	+0.5
1,145,913	+		LU632_RS06035	0.59	-0.9
1,145,914	-		LU632_RS06035	0.59	+0.4
1,146,097	+		LU632_RS06035	0.79	-1.2
1,146,268	-				-0.2
1,146,333	-				+1.1
1,146,333	-				-0.1
1,146,379	+				+0.6
1,146,436	-				-2.6
1,146,444	-				-2.3
1,146,499	+				-2.4
1,146,500	-				-0.2
1,146,537	-	lysA	LU632_RS06040	0.10	-0.6
1,146,537	-	lysA	LU632_RS06040	0.10	-2.7
1,146,723	+	lysA	LU632_RS06040	0.25	-1.0
1,146,723	+	lysA	LU632_RS06040	0.25	-2.6
1,146,724	-	lysA	LU632_RS06040	0.25	-2.7
1,146,724	-	lysA	LU632_RS06040	0.25	+0.8
1,146,994	+	lysA	LU632_RS06040	0.46	-3.5
1,147,132	+	lysA	LU632_RS06040	0.57	-0.6
1,147,158	+	lysA	LU632_RS06040	0.59	-0.6
1,147,165	-	lysA	LU632_RS06040	0.60	+1.4
1,147,333	+	lysA	LU632_RS06040	0.73	-2.0
1,147,333	+	lysA	LU632_RS06040	0.73	-0.6
1,147,334	-	lysA	LU632_RS06040	0.73	-2.6
1,147,343	-	lysA	LU632_RS06040	0.74	+0.4
1,147,350	+	lysA	LU632_RS06040	0.75	-1.3
1,147,350	+	lysA	LU632_RS06040	0.75	-1.6
1,147,351	-	lysA	LU632_RS06040	0.75	-2.3
1,147,559	-				-0.9
1,147,664	+				-0.3
1,147,666	+				-1.1
1,147,667	-				+0.6
1,147,836	+	galR	LU632_RS06045	0.16	+1.2
1,147,837	-	galR	LU632_RS06045	0.16	+0.9
1,147,840	+	galR	LU632_RS06045	0.16	+2.0
1,147,841	-	galR	LU632_RS06045	0.16	+0.5
1,148,083	+	galR	LU632_RS06045	0.41	-0.3
1,148,083	+	galR	LU632_RS06045	0.41	-0.8
1,148,135	+	galR	LU632_RS06045	0.46	-1.7
1,148,195	-	galR	LU632_RS06045	0.52	-2.3
1,148,195	-	galR	LU632_RS06045	0.52	-0.4
1,148,247	+	galR	LU632_RS06045	0.57	-0.6
1,148,286	+	galR	LU632_RS06045	0.61	-0.2
1,148,546	-	galR	LU632_RS06045	0.87	-1.1