Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05840

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,107,821	-				+0.9
1,107,873	+		LU632_RS05835	0.23	+0.8
1,108,039	+		LU632_RS05835	0.66	-0.8
1,108,040	-		LU632_RS05835	0.66	-1.9
1,108,048	+		LU632_RS05835	0.68	-0.2
1,108,066	+		LU632_RS05835	0.73	-0.2
1,108,155	+				-1.4
1,108,158	+				-1.1
1,108,167	-				+0.4
1,108,235	-				+1.2
1,108,254	+				-0.8
1,108,279	+				+0.5
1,108,279	+				-2.5
1,108,291	-				-0.6
1,108,291	-				-2.2
1,108,327	+				-0.1
1,108,407	+				+1.6
1,108,408	-				-0.6
1,108,408	-				+0.1
1,108,453	-				-1.2
1,108,581	-		LU632_RS05840	0.13	+0.3
1,108,672	-		LU632_RS05840	0.26	-2.2
1,108,797	+		LU632_RS05840	0.43	+0.7
1,108,842	+		LU632_RS05840	0.49	+1.4
1,108,842	+		LU632_RS05840	0.49	+0.2
1,108,953	+		LU632_RS05840	0.65	+0.9
1,108,986	+		LU632_RS05840	0.69	-1.4
1,108,987	-		LU632_RS05840	0.69	-0.5
1,109,069	-		LU632_RS05840	0.81	-0.4
1,109,095	+		LU632_RS05840	0.84	-0.9
1,109,095	+		LU632_RS05840	0.84	-1.6
1,109,140	+				+0.2
1,109,206	+				-2.5
1,109,230	+				-1.1
1,109,231	-				-1.2
1,109,231	-				+0.2
1,109,295	+				-0.6
1,109,296	-				-1.4
1,109,397	+		LU632_RS05845	0.20	+1.8
1,109,398	-		LU632_RS05845	0.20	+0.8
1,109,398	-		LU632_RS05845	0.20	-1.1
1,109,398	-		LU632_RS05845	0.20	-0.9
1,109,398	-		LU632_RS05845	0.20	+1.5
1,109,479	+		LU632_RS05845	0.29	+0.0
1,109,480	-		LU632_RS05845	0.30	-1.8
1,109,497	+		LU632_RS05845	0.31	+1.0
1,109,514	+		LU632_RS05845	0.33	-0.9
1,109,514	+		LU632_RS05845	0.33	-1.6
1,109,515	-		LU632_RS05845	0.33	-0.4
1,109,795	-		LU632_RS05845	0.65	+1.9
1,109,979	+		LU632_RS05845	0.85	-3.3
1,109,979	+		LU632_RS05845	0.85	+0.7
1,109,980	-		LU632_RS05845	0.85	+2.0
1,110,025	-				-0.2
1,110,064	+				-2.2
1,110,150	+				+0.3
1,110,150	+				-0.7
1,110,151	-				-1.3
1,110,151	-				+0.6