Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05555

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
1,075,281	+				-1.7
1,075,534	+	mscS	LU632_RS05550	0.37	+1.8
1,075,608	-	mscS	LU632_RS05550	0.46	+0.8
1,075,764	-	mscS	LU632_RS05550	0.63	-0.4
1,075,811	-	mscS	LU632_RS05550	0.69	-0.9
1,075,844	-	mscS	LU632_RS05550	0.72	+1.8
1,076,000	+				+1.3
1,076,001	-				-1.6
1,076,001	-				-2.4
1,076,002	+				+1.7
1,076,003	-				+0.4
1,076,040	-				-0.7
1,076,086	-				-1.6
1,076,102	-				-0.1
1,076,894	-				-0.3
1,076,912	+				+1.4
1,076,912	+				-0.2
1,076,951	+		LU632_RS05560	0.11	+0.4
1,076,972	+		LU632_RS05560	0.15	-1.4
1,077,024	+		LU632_RS05560	0.23	+0.7
1,077,024	+		LU632_RS05560	0.23	-0.5
1,077,024	+		LU632_RS05560	0.23	-0.5
1,077,025	-		LU632_RS05560	0.24	-1.0
1,077,025	-		LU632_RS05560	0.24	+0.4
1,077,027	-		LU632_RS05560	0.24	+0.8
1,077,027	-		LU632_RS05560	0.24	+1.4
1,077,027	-		LU632_RS05560	0.24	+0.4
1,077,084	-		LU632_RS05560	0.33	-2.2
1,077,213	+		LU632_RS05560	0.54	-0.2
1,077,264	+		LU632_RS05560	0.63	+1.4
1,077,484	+				+1.6
1,077,488	+				-2.0
1,077,488	+				+0.9
1,077,489	-				+0.7
1,077,513	-				+0.9
1,077,514	+				+0.0
1,077,514	+				-1.1
1,077,514	+				+0.3
1,077,514	+				+0.1
1,077,514	+				+0.5
1,077,577	+		LU632_RS05565	0.19	+1.0
1,077,578	-		LU632_RS05565	0.19	-1.0
1,077,659	+		LU632_RS05565	0.45	+1.7
1,077,659	+		LU632_RS05565	0.45	-0.3
1,077,659	+		LU632_RS05565	0.45	+1.3
1,077,660	-		LU632_RS05565	0.45	+0.4