Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05050 and LU632_RS05055 are separated by 304 nucleotides LU632_RS05055 and LU632_RS05060 overlap by 4 nucleotides
LU632_RS05050: LU632_RS05050 - DNA-binding protein, at 981,788 to 985,585
_RS05050
LU632_RS05055: LU632_RS05055 - TIGR03757 family integrating conjugative element protein, at 985,890 to 986,291
_RS05055
LU632_RS05060: LU632_RS05060 - integrase domain-containing protein, at 986,288 to 987,345
_RS05060
Position (kb) 985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 984.920 kb on - strand, within LU632_RS05050 at 985.046 kb on - strand, within LU632_RS05050 at 985.055 kb on - strand, within LU632_RS05050 at 985.174 kb on + strand, within LU632_RS05050 at 985.291 kb on - strand at 985.504 kb on + strand at 985.546 kb on - strand at 985.546 kb on - strand at 985.574 kb on + strand at 985.575 kb on - strand at 985.684 kb on + strand at 985.705 kb on + strand at 985.705 kb on + strand at 985.706 kb on - strand at 985.707 kb on + strand at 985.729 kb on - strand at 985.729 kb on - strand at 985.729 kb on - strand at 985.740 kb on + strand at 985.741 kb on - strand at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.958 kb on - strand, within LU632_RS05055 at 985.958 kb on - strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.960 kb on - strand, within LU632_RS05055 at 985.962 kb on - strand, within LU632_RS05055 at 986.161 kb on + strand, within LU632_RS05055 at 986.229 kb on + strand, within LU632_RS05055 at 986.230 kb on - strand, within LU632_RS05055 at 986.431 kb on + strand, within LU632_RS05060 at 986.432 kb on - strand, within LU632_RS05060 at 986.432 kb on - strand, within LU632_RS05060 at 986.502 kb on + strand, within LU632_RS05060 at 986.519 kb on - strand, within LU632_RS05060 at 986.543 kb on + strand, within LU632_RS05060 at 986.543 kb on + strand, within LU632_RS05060 at 986.641 kb on - strand, within LU632_RS05060 at 986.703 kb on - strand, within LU632_RS05060 at 986.796 kb on + strand, within LU632_RS05060 at 986.796 kb on + strand, within LU632_RS05060 at 986.806 kb on - strand, within LU632_RS05060 at 986.823 kb on + strand, within LU632_RS05060 at 986.965 kb on - strand, within LU632_RS05060 at 986.965 kb on - strand, within LU632_RS05060 at 987.073 kb on + strand, within LU632_RS05060 at 987.074 kb on - strand, within LU632_RS05060 at 987.128 kb on + strand, within LU632_RS05060 at 987.129 kb on - strand, within LU632_RS05060 at 987.144 kb on + strand, within LU632_RS05060 at 987.145 kb on - strand, within LU632_RS05060 at 987.149 kb on + strand, within LU632_RS05060 at 987.150 kb on - strand, within LU632_RS05060 at 987.192 kb on - strand, within LU632_RS05060 at 987.197 kb on - strand, within LU632_RS05060 at 987.202 kb on + strand, within LU632_RS05060 at 987.203 kb on - strand, within LU632_RS05060 at 987.203 kb on - strand, within LU632_RS05060 at 987.228 kb on + strand, within LU632_RS05060 at 987.229 kb on - strand, within LU632_RS05060
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 984,920 - LU632_RS05050 0.82 -0.2 985,046 - LU632_RS05050 0.86 +0.4 985,055 - LU632_RS05050 0.86 +0.9 985,174 + LU632_RS05050 0.89 +0.8 985,291 - -0.1 985,504 + +0.1 985,546 - -0.4 985,546 - -1.1 985,574 + -2.5 985,575 - +0.2 985,684 + -0.4 985,705 + -0.8 985,705 + +0.8 985,706 - +0.5 985,707 + -2.1 985,729 - +0.2 985,729 - +0.8 985,729 - +2.2 985,740 + -0.5 985,741 - -0.4 985,957 + LU632_RS05055 0.17 -0.5 985,957 + LU632_RS05055 0.17 +0.2 985,957 + LU632_RS05055 0.17 -2.2 985,957 + LU632_RS05055 0.17 +1.4 985,958 - LU632_RS05055 0.17 +0.2 985,958 - LU632_RS05055 0.17 -1.2 985,959 + LU632_RS05055 0.17 -2.5 985,959 + LU632_RS05055 0.17 -0.7 985,959 + LU632_RS05055 0.17 +1.2 985,960 - LU632_RS05055 0.17 -0.3 985,962 - LU632_RS05055 0.18 +0.1 986,161 + LU632_RS05055 0.67 -0.9 986,229 + LU632_RS05055 0.84 -1.2 986,230 - LU632_RS05055 0.85 +0.2 986,431 + LU632_RS05060 0.14 -2.0 986,432 - LU632_RS05060 0.14 +1.7 986,432 - LU632_RS05060 0.14 -0.6 986,502 + LU632_RS05060 0.20 -0.2 986,519 - LU632_RS05060 0.22 -1.4 986,543 + LU632_RS05060 0.24 -1.0 986,543 + LU632_RS05060 0.24 +0.2 986,641 - LU632_RS05060 0.33 -1.1 986,703 - LU632_RS05060 0.39 -0.3 986,796 + LU632_RS05060 0.48 -1.3 986,796 + LU632_RS05060 0.48 +3.5 986,806 - LU632_RS05060 0.49 -0.3 986,823 + LU632_RS05060 0.51 -0.7 986,965 - LU632_RS05060 0.64 +0.3 986,965 - LU632_RS05060 0.64 +1.4 987,073 + LU632_RS05060 0.74 -0.4 987,074 - LU632_RS05060 0.74 -1.8 987,128 + LU632_RS05060 0.79 -1.4 987,129 - LU632_RS05060 0.79 -0.1 987,144 + LU632_RS05060 0.81 +0.3 987,145 - LU632_RS05060 0.81 -0.5 987,149 + LU632_RS05060 0.81 +2.1 987,150 - LU632_RS05060 0.81 +2.8 987,192 - LU632_RS05060 0.85 +1.9 987,197 - LU632_RS05060 0.86 +0.8 987,202 + LU632_RS05060 0.86 -0.7 987,203 - LU632_RS05060 0.86 -0.2 987,203 - LU632_RS05060 0.86 -0.3 987,228 + LU632_RS05060 0.89 -0.3 987,229 - LU632_RS05060 0.89 -1.6
Or see this region's nucleotide sequence