Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05015 and LU632_RS05020 overlap by 4 nucleotides LU632_RS05020 and LU632_RS05025 overlap by 1 nucleotides LU632_RS05025 and LU632_RS05030 overlap by 5 nucleotides LU632_RS05030 and LU632_RS05035 are separated by 509 nucleotides LU632_RS05035 and LU632_RS05040 overlap by 1 nucleotides
LU632_RS05015: LU632_RS05015 - TIGR03750 family conjugal transfer protein, at 975,732 to 976,088
_RS05015
LU632_RS05020: LU632_RS05020 - TIGR03746 family integrating conjugative element protein, at 976,085 to 976,744
_RS05020
LU632_RS05025: LU632_RS05025 - TIGR03749 family integrating conjugative element protein, at 976,744 to 977,028
_RS05025
LU632_RS05030: LU632_RS05030 - TIGR03752 family integrating conjugative element protein, at 977,024 to 977,569
_RS05030
LU632_RS05035: LU632_RS05035 - TIGR03751 family conjugal transfer lipoprotein, at 978,079 to 978,417
_RS05035
LU632_RS05040: LU632_RS05040 - conjugative transfer ATPase, at 978,417 to 981,281
_RS05040
Position (kb) 977
978 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 976.126 kb on + strand at 976.173 kb on + strand, within LU632_RS05020 at 976.236 kb on + strand, within LU632_RS05020 at 976.301 kb on + strand, within LU632_RS05020 at 976.301 kb on + strand, within LU632_RS05020 at 976.302 kb on - strand, within LU632_RS05020 at 976.670 kb on + strand, within LU632_RS05020 at 976.911 kb on - strand, within LU632_RS05025 at 977.189 kb on - strand, within LU632_RS05030 at 977.223 kb on - strand, within LU632_RS05030 at 977.223 kb on - strand, within LU632_RS05030 at 977.288 kb on + strand, within LU632_RS05030 at 977.288 kb on + strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.302 kb on + strand, within LU632_RS05030 at 977.302 kb on + strand, within LU632_RS05030 at 977.303 kb on - strand, within LU632_RS05030 at 977.303 kb on - strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.436 kb on - strand, within LU632_RS05030 at 977.440 kb on - strand, within LU632_RS05030 at 977.440 kb on - strand, within LU632_RS05030 at 977.463 kb on + strand, within LU632_RS05030 at 977.463 kb on + strand, within LU632_RS05030 at 977.464 kb on - strand, within LU632_RS05030 at 977.464 kb on - strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.500 kb on + strand, within LU632_RS05030 at 977.767 kb on + strand at 977.799 kb on + strand at 977.885 kb on - strand at 977.885 kb on - strand at 977.910 kb on + strand at 977.910 kb on + strand at 977.911 kb on - strand at 978.030 kb on + strand at 978.047 kb on + strand at 978.048 kb on - strand at 978.099 kb on + strand at 978.100 kb on - strand at 978.213 kb on + strand, within LU632_RS05035 at 978.301 kb on + strand, within LU632_RS05035 at 978.301 kb on + strand, within LU632_RS05035 at 978.302 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.357 kb on - strand, within LU632_RS05035 at 978.368 kb on - strand, within LU632_RS05035 at 978.383 kb on - strand, within LU632_RS05035 at 978.383 kb on - strand, within LU632_RS05035 at 978.565 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 976,126 + -1.6 976,173 + LU632_RS05020 0.13 +1.8 976,236 + LU632_RS05020 0.23 -0.2 976,301 + LU632_RS05020 0.33 +1.0 976,301 + LU632_RS05020 0.33 +1.8 976,302 - LU632_RS05020 0.33 -1.5 976,670 + LU632_RS05020 0.89 +1.7 976,911 - LU632_RS05025 0.59 +0.4 977,189 - LU632_RS05030 0.30 -0.4 977,223 - LU632_RS05030 0.36 -0.1 977,223 - LU632_RS05030 0.36 +0.1 977,288 + LU632_RS05030 0.48 +0.2 977,288 + LU632_RS05030 0.48 +0.3 977,289 - LU632_RS05030 0.49 +2.6 977,289 - LU632_RS05030 0.49 -0.3 977,289 - LU632_RS05030 0.49 +1.7 977,302 + LU632_RS05030 0.51 -2.6 977,302 + LU632_RS05030 0.51 -1.2 977,303 - LU632_RS05030 0.51 -0.8 977,303 - LU632_RS05030 0.51 -0.3 977,435 + LU632_RS05030 0.75 -0.4 977,435 + LU632_RS05030 0.75 +0.4 977,435 + LU632_RS05030 0.75 -0.4 977,435 + LU632_RS05030 0.75 +1.0 977,436 - LU632_RS05030 0.75 +0.4 977,440 - LU632_RS05030 0.76 +1.1 977,440 - LU632_RS05030 0.76 +1.3 977,463 + LU632_RS05030 0.80 +0.1 977,463 + LU632_RS05030 0.80 -1.8 977,464 - LU632_RS05030 0.81 -0.2 977,464 - LU632_RS05030 0.81 -0.6 977,467 + LU632_RS05030 0.81 -2.3 977,467 + LU632_RS05030 0.81 -1.2 977,467 + LU632_RS05030 0.81 +1.4 977,467 + LU632_RS05030 0.81 +2.8 977,468 - LU632_RS05030 0.81 +0.6 977,468 - LU632_RS05030 0.81 +0.3 977,468 - LU632_RS05030 0.81 +1.2 977,500 + LU632_RS05030 0.87 +1.2 977,767 + +1.3 977,799 + +0.9 977,885 - -0.2 977,885 - +0.8 977,910 + -0.1 977,910 + -1.2 977,911 - -0.1 978,030 + -0.6 978,047 + -0.9 978,048 - +0.6 978,099 + -0.6 978,100 - -0.8 978,213 + LU632_RS05035 0.40 -0.7 978,301 + LU632_RS05035 0.65 +2.8 978,301 + LU632_RS05035 0.65 +0.1 978,302 - LU632_RS05035 0.66 -0.1 978,357 - LU632_RS05035 0.82 +0.2 978,357 - LU632_RS05035 0.82 -0.9 978,357 - LU632_RS05035 0.82 -1.2 978,357 - LU632_RS05035 0.82 -1.4 978,368 - LU632_RS05035 0.85 -1.4 978,383 - LU632_RS05035 0.90 +1.2 978,383 - LU632_RS05035 0.90 -2.3 978,565 - +0.8
Or see this region's nucleotide sequence