Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04745

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04735 and LU632_RS04740 are separated by 69 nucleotidesLU632_RS04740 and LU632_RS04745 are separated by 52 nucleotidesLU632_RS04745 and LU632_RS04750 are separated by 407 nucleotides LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198 _RS04735 LU632_RS04740: LU632_RS04740 - DNA topoisomerase IV subunit B, at 932,268 to 932,570 _RS04740 LU632_RS04745: LU632_RS04745 - IS3 family transposase, at 932,623 to 933,792 _RS04745 LU632_RS04750: LU632_RS04750 - ATP-binding domain-containing protein, at 934,200 to 934,996 _RS04750 Position (kb) 932 933 934Strain fitness (log2 ratio) -1 0 1 2 3at 931.704 kb on - strand, within LU632_RS04735at 931.704 kb on - strand, within LU632_RS04735at 931.704 kb on - strand, within LU632_RS04735at 931.707 kb on + strand, within LU632_RS04735at 931.708 kb on - strand, within LU632_RS04735at 931.716 kb on - strand, within LU632_RS04735at 931.743 kb on + strand, within LU632_RS04735at 931.775 kb on + strand, within LU632_RS04735at 931.775 kb on + strand, within LU632_RS04735at 931.821 kb on + strand, within LU632_RS04735at 931.821 kb on + strand, within LU632_RS04735at 931.821 kb on + strand, within LU632_RS04735at 931.821 kb on + strand, within LU632_RS04735at 931.821 kb on + strand, within LU632_RS04735at 931.821 kb on + strand, within LU632_RS04735at 931.822 kb on - strand, within LU632_RS04735at 931.822 kb on - strand, within LU632_RS04735at 931.848 kb on - strand, within LU632_RS04735at 931.906 kb on + strand, within LU632_RS04735at 931.906 kb on + strand, within LU632_RS04735at 931.906 kb on + strand, within LU632_RS04735at 931.907 kb on - strand, within LU632_RS04735at 931.995 kb on - strandat 932.312 kb on + strand, within LU632_RS04740at 932.313 kb on - strand, within LU632_RS04740at 932.555 kb on - strandat 932.578 kb on - strandat 932.578 kb on - strandat 933.852 kb on + strandat 933.852 kb on + strandat 933.852 kb on + strandat 933.852 kb on + strandat 933.863 kb on + strandat 933.866 kb on + strandat 933.875 kb on + strandat 933.883 kb on - strandat 933.886 kb on + strandat 933.886 kb on + strandat 933.886 kb on + strandat 933.886 kb on + strandat 933.886 kb on - strandat 933.887 kb on - strandat 933.916 kb on - strandat 933.965 kb on + strandat 933.993 kb on + strandat 933.994 kb on - strandat 933.997 kb on - strandat 934.067 kb on + strandat 934.068 kb on - strandat 934.070 kb on + strandat 934.286 kb on + strand, within LU632_RS04750at 934.287 kb on - strand, within LU632_RS04750at 934.342 kb on - strand, within LU632_RS04750at 934.350 kb on + strand, within LU632_RS04750at 934.350 kb on + strand, within LU632_RS04750at 934.478 kb on + strand, within LU632_RS04750at 934.479 kb on - strand, within LU632_RS04750at 934.502 kb on - strand, within LU632_RS04750at 934.583 kb on + strand, within LU632_RS04750at 934.649 kb on + strand, within LU632_RS04750at 934.650 kb on - strand, within LU632_RS04750

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA
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931,704 - LU632_RS04735 0.76 +3.0
931,704 - LU632_RS04735 0.76 +0.3
931,704 - LU632_RS04735 0.76 +0.5
931,707 + LU632_RS04735 0.76 -0.4
931,708 - LU632_RS04735 0.76 -0.9
931,716 - LU632_RS04735 0.76 -1.4
931,743 + LU632_RS04735 0.78 +0.3
931,775 + LU632_RS04735 0.79 +0.9
931,775 + LU632_RS04735 0.79 +0.4
931,821 + LU632_RS04735 0.82 +0.4
931,821 + LU632_RS04735 0.82 -1.6
931,821 + LU632_RS04735 0.82 -0.7
931,821 + LU632_RS04735 0.82 +0.8
931,821 + LU632_RS04735 0.82 +0.2
931,821 + LU632_RS04735 0.82 -1.0
931,822 - LU632_RS04735 0.82 +1.7
931,822 - LU632_RS04735 0.82 -0.2
931,848 - LU632_RS04735 0.83 -1.4
931,906 + LU632_RS04735 0.86 +0.6
931,906 + LU632_RS04735 0.86 +1.5
931,906 + LU632_RS04735 0.86 -0.2
931,907 - LU632_RS04735 0.86 -1.0
931,995 - -1.0
932,312 + LU632_RS04740 0.15 +0.2
932,313 - LU632_RS04740 0.15 -0.6
932,555 - +0.3
932,578 - +0.9
932,578 - +0.8
933,852 + +0.0
933,852 + +0.2
933,852 + +2.0
933,852 + +0.0
933,863 + -0.1
933,866 + -0.4
933,875 + -1.6
933,883 - -0.8
933,886 + +0.8
933,886 + +0.3
933,886 + -1.1
933,886 + +2.9
933,886 - -1.5
933,887 - +1.5
933,916 - -0.4
933,965 + +0.8
933,993 + -1.0
933,994 - +0.4
933,997 - +0.7
934,067 + +0.6
934,068 - +1.4
934,070 + -0.2
934,286 + LU632_RS04750 0.11 -1.6
934,287 - LU632_RS04750 0.11 -1.4
934,342 - LU632_RS04750 0.18 +0.5
934,350 + LU632_RS04750 0.19 -0.2
934,350 + LU632_RS04750 0.19 -0.2
934,478 + LU632_RS04750 0.35 +0.3
934,479 - LU632_RS04750 0.35 -0.0
934,502 - LU632_RS04750 0.38 -0.1
934,583 + LU632_RS04750 0.48 +0.7
934,649 + LU632_RS04750 0.56 -0.8
934,650 - LU632_RS04750 0.56 +1.4

Or see this region's nucleotide sequence