Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04705 and LU632_RS04710 are separated by 416 nucleotides LU632_RS04710 and LU632_RS04715 are separated by 350 nucleotides
LU632_RS04705: LU632_RS04705 - helix-turn-helix domain-containing protein, at 921,920 to 922,945
_RS04705
LU632_RS04710: LU632_RS04710 - IS110 family transposase, at 923,362 to 924,359
_RS04710
LU632_RS04715: LU632_RS04715 - IS5 family transposase, at 924,710 to 925,477
_RS04715
Position (kb) 923
924
925 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 923.083 kb on + strand at 923.084 kb on - strand at 923.085 kb on + strand at 923.086 kb on - strand at 923.087 kb on + strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.117 kb on - strand at 923.907 kb on - strand, within LU632_RS04710 at 924.491 kb on - strand at 924.491 kb on - strand at 924.491 kb on - strand at 924.516 kb on - strand at 924.516 kb on - strand at 924.568 kb on + strand at 924.569 kb on - strand at 924.590 kb on + strand at 924.591 kb on - strand at 924.591 kb on - strand at 924.597 kb on + strand at 924.598 kb on - strand at 924.599 kb on + strand at 924.600 kb on - strand at 924.601 kb on + strand at 924.602 kb on - strand at 924.629 kb on + strand at 924.630 kb on - strand at 924.665 kb on + strand at 924.666 kb on - strand at 924.666 kb on - strand at 924.672 kb on + strand at 924.673 kb on - strand at 924.674 kb on + strand at 924.674 kb on + strand at 924.675 kb on - strand at 924.675 kb on - strand at 924.689 kb on + strand at 924.708 kb on + strand at 924.728 kb on + strand at 924.752 kb on - strand at 924.854 kb on - strand, within LU632_RS04715 at 924.854 kb on - strand, within LU632_RS04715 at 924.958 kb on + strand, within LU632_RS04715 at 924.959 kb on - strand, within LU632_RS04715 at 924.963 kb on - strand, within LU632_RS04715 at 925.119 kb on + strand, within LU632_RS04715 at 925.119 kb on - strand, within LU632_RS04715 at 925.120 kb on - strand, within LU632_RS04715 at 925.142 kb on - strand, within LU632_RS04715 at 925.338 kb on - strand, within LU632_RS04715
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 923,083 + -0.9 923,084 - +1.5 923,085 + +0.8 923,086 - +0.1 923,087 + -0.9 923,088 - -1.0 923,088 - -1.0 923,088 - +3.8 923,088 - +0.6 923,088 - +0.4 923,117 - +0.4 923,907 - LU632_RS04710 0.55 -0.8 924,491 - -2.2 924,491 - +0.2 924,491 - +0.8 924,516 - -0.0 924,516 - -0.0 924,568 + +0.1 924,569 - -1.7 924,590 + -0.2 924,591 - -0.2 924,591 - +0.1 924,597 + +0.1 924,598 - -1.4 924,599 + -0.5 924,600 - +0.4 924,601 + -0.3 924,602 - +0.7 924,629 + -1.2 924,630 - +0.9 924,665 + -0.9 924,666 - +1.3 924,666 - +0.3 924,672 + -1.4 924,673 - +0.0 924,674 + -1.1 924,674 + -1.0 924,675 - -1.1 924,675 - +0.2 924,689 + -0.2 924,708 + +1.7 924,728 + -0.4 924,752 - +1.9 924,854 - LU632_RS04715 0.19 +0.1 924,854 - LU632_RS04715 0.19 -1.1 924,958 + LU632_RS04715 0.32 -0.2 924,959 - LU632_RS04715 0.32 +0.2 924,963 - LU632_RS04715 0.33 -0.2 925,119 + LU632_RS04715 0.53 +0.6 925,119 - LU632_RS04715 0.53 +0.2 925,120 - LU632_RS04715 0.53 -0.5 925,142 - LU632_RS04715 0.56 -0.7 925,338 - LU632_RS04715 0.82 +1.1
Or see this region's nucleotide sequence