Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04695 and LU632_RS04700 are separated by 2 nucleotides LU632_RS04700 and LU632_RS04705 are separated by 256 nucleotides
LU632_RS04695: LU632_RS04695 - MFS transporter, at 919,040 to 920,632
_RS04695
LU632_RS04700: LU632_RS04700 - HlyD family secretion protein, at 920,635 to 921,663
_RS04700
LU632_RS04705: LU632_RS04705 - helix-turn-helix domain-containing protein, at 921,920 to 922,945
_RS04705
Position (kb) 920
921
922 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 919.659 kb on + strand, within LU632_RS04695 at 919.659 kb on + strand, within LU632_RS04695 at 919.659 kb on + strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.798 kb on - strand, within LU632_RS04695 at 919.801 kb on + strand, within LU632_RS04695 at 919.802 kb on - strand, within LU632_RS04695 at 919.802 kb on - strand, within LU632_RS04695 at 919.831 kb on + strand, within LU632_RS04695 at 919.890 kb on + strand, within LU632_RS04695 at 919.890 kb on + strand, within LU632_RS04695 at 919.920 kb on + strand, within LU632_RS04695 at 919.932 kb on - strand, within LU632_RS04695 at 919.995 kb on + strand, within LU632_RS04695 at 920.019 kb on + strand, within LU632_RS04695 at 920.085 kb on + strand, within LU632_RS04695 at 920.086 kb on - strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.114 kb on + strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.115 kb on - strand, within LU632_RS04695 at 920.118 kb on + strand, within LU632_RS04695 at 920.119 kb on - strand, within LU632_RS04695 at 920.261 kb on - strand, within LU632_RS04695 at 920.344 kb on + strand, within LU632_RS04695 at 920.345 kb on - strand, within LU632_RS04695 at 920.345 kb on - strand, within LU632_RS04695 at 920.350 kb on - strand, within LU632_RS04695 at 920.366 kb on - strand, within LU632_RS04695 at 920.380 kb on + strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.381 kb on - strand, within LU632_RS04695 at 920.416 kb on + strand, within LU632_RS04695 at 920.417 kb on - strand, within LU632_RS04695 at 920.460 kb on + strand, within LU632_RS04695 at 920.470 kb on + strand, within LU632_RS04695 at 920.474 kb on - strand at 920.478 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.519 kb on + strand at 920.520 kb on - strand at 920.604 kb on + strand at 920.604 kb on + strand at 920.605 kb on - strand at 920.605 kb on - strand at 920.631 kb on - strand at 920.661 kb on + strand at 920.663 kb on + strand at 920.664 kb on - strand at 920.681 kb on + strand at 920.802 kb on + strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.803 kb on - strand, within LU632_RS04700 at 920.826 kb on + strand, within LU632_RS04700 at 920.913 kb on - strand, within LU632_RS04700 at 920.925 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 921.022 kb on + strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.105 kb on + strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.195 kb on - strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.263 kb on - strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700 at 921.666 kb on - strand at 921.670 kb on + strand at 921.671 kb on - strand at 921.745 kb on + strand at 921.806 kb on + strand at 921.807 kb on - strand at 921.819 kb on - strand at 921.891 kb on - strand at 922.322 kb on + strand, within LU632_RS04705 at 922.360 kb on - strand, within LU632_RS04705
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 919,659 + LU632_RS04695 0.39 -1.5 919,659 + LU632_RS04695 0.39 -0.2 919,659 + LU632_RS04695 0.39 -1.4 919,798 - LU632_RS04695 0.48 -0.2 919,798 - LU632_RS04695 0.48 +1.4 919,798 - LU632_RS04695 0.48 +0.4 919,798 - LU632_RS04695 0.48 +0.2 919,801 + LU632_RS04695 0.48 +0.9 919,802 - LU632_RS04695 0.48 +0.8 919,802 - LU632_RS04695 0.48 +0.8 919,831 + LU632_RS04695 0.50 -1.0 919,890 + LU632_RS04695 0.53 -0.5 919,890 + LU632_RS04695 0.53 -0.0 919,920 + LU632_RS04695 0.55 +1.4 919,932 - LU632_RS04695 0.56 -0.1 919,995 + LU632_RS04695 0.60 -0.2 920,019 + LU632_RS04695 0.61 -0.9 920,085 + LU632_RS04695 0.66 +0.5 920,086 - LU632_RS04695 0.66 +1.1 920,114 + LU632_RS04695 0.67 -0.6 920,114 + LU632_RS04695 0.67 +1.4 920,114 + LU632_RS04695 0.67 +1.6 920,114 + LU632_RS04695 0.67 +0.4 920,114 + LU632_RS04695 0.67 -0.5 920,114 + LU632_RS04695 0.67 +0.2 920,115 - LU632_RS04695 0.67 -0.5 920,115 - LU632_RS04695 0.67 -1.2 920,115 - LU632_RS04695 0.67 +1.6 920,115 - LU632_RS04695 0.67 +1.1 920,118 + LU632_RS04695 0.68 +1.7 920,119 - LU632_RS04695 0.68 -2.2 920,261 - LU632_RS04695 0.77 -0.0 920,344 + LU632_RS04695 0.82 -1.4 920,345 - LU632_RS04695 0.82 +1.7 920,345 - LU632_RS04695 0.82 -0.2 920,350 - LU632_RS04695 0.82 +0.6 920,366 - LU632_RS04695 0.83 +1.4 920,380 + LU632_RS04695 0.84 -0.8 920,381 - LU632_RS04695 0.84 -1.4 920,381 - LU632_RS04695 0.84 +0.4 920,381 - LU632_RS04695 0.84 -0.4 920,416 + LU632_RS04695 0.86 +1.6 920,417 - LU632_RS04695 0.86 +4.6 920,460 + LU632_RS04695 0.89 +0.4 920,470 + LU632_RS04695 0.90 -0.8 920,474 - -0.8 920,478 + +1.5 920,519 + -1.2 920,519 + +0.7 920,519 + -0.6 920,519 + +0.8 920,520 - -3.0 920,604 + -2.3 920,604 + -1.6 920,605 - -0.9 920,605 - +1.1 920,631 - -0.4 920,661 + -0.1 920,663 + -0.3 920,664 - -1.8 920,681 + -0.6 920,802 + LU632_RS04700 0.16 -2.2 920,803 - LU632_RS04700 0.16 -1.5 920,803 - LU632_RS04700 0.16 -0.0 920,803 - LU632_RS04700 0.16 -1.2 920,826 + LU632_RS04700 0.19 -0.7 920,913 - LU632_RS04700 0.27 -0.2 920,925 - LU632_RS04700 0.28 +0.2 920,974 - LU632_RS04700 0.33 -1.2 920,974 - LU632_RS04700 0.33 -1.8 921,022 + LU632_RS04700 0.38 +1.8 921,023 - LU632_RS04700 0.38 -1.6 921,023 - LU632_RS04700 0.38 +1.4 921,105 + LU632_RS04700 0.46 +0.0 921,109 - LU632_RS04700 0.46 -0.7 921,109 - LU632_RS04700 0.46 +0.4 921,195 - LU632_RS04700 0.54 +1.0 921,213 + LU632_RS04700 0.56 -2.0 921,213 + LU632_RS04700 0.56 +5.0 921,213 + LU632_RS04700 0.56 +1.1 921,263 - LU632_RS04700 0.61 +0.4 921,376 + LU632_RS04700 0.72 -1.4 921,376 + LU632_RS04700 0.72 -0.1 921,376 + LU632_RS04700 0.72 +1.6 921,380 + LU632_RS04700 0.72 -2.8 921,380 + LU632_RS04700 0.72 +2.1 921,381 - LU632_RS04700 0.72 -0.4 921,381 - LU632_RS04700 0.72 +1.3 921,666 - -1.4 921,670 + +0.7 921,671 - +0.4 921,745 + -0.2 921,806 + +0.5 921,807 - +0.6 921,819 - -0.2 921,891 - +0.2 922,322 + LU632_RS04705 0.39 -0.6 922,360 - LU632_RS04705 0.43 -0.4
Or see this region's nucleotide sequence