Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04560 and LU632_RS04565 are separated by 73 nucleotides LU632_RS04565 and LU632_RS04570 overlap by 61 nucleotides LU632_RS04570 and LU632_RS04575 are separated by 147 nucleotides
LU632_RS04560: LU632_RS04560 - Rpn family recombination-promoting nuclease/putative transposase, at 894,128 to 895,066
_RS04560
LU632_RS04565: LU632_RS04565 - restriction endonuclease, at 895,140 to 895,556
_RS04565
LU632_RS04570: LU632_RS04570 - hypothetical protein, at 895,496 to 895,918
_RS04570
LU632_RS04575: LU632_RS04575 - IS91 family transposase, at 896,066 to 897,289
_RS04575
Position (kb) 895
896 Strain fitness (log2 ratio) -2
-1
0
1
2 at 894.497 kb on - strand, within LU632_RS04560 at 894.587 kb on - strand, within LU632_RS04560 at 894.594 kb on + strand, within LU632_RS04560 at 894.595 kb on - strand, within LU632_RS04560 at 894.675 kb on + strand, within LU632_RS04560 at 894.676 kb on - strand, within LU632_RS04560 at 894.676 kb on - strand, within LU632_RS04560 at 894.690 kb on - strand, within LU632_RS04560 at 894.692 kb on + strand, within LU632_RS04560 at 894.807 kb on - strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.814 kb on + strand, within LU632_RS04560 at 894.815 kb on - strand, within LU632_RS04560 at 894.815 kb on - strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.816 kb on + strand, within LU632_RS04560 at 894.850 kb on - strand, within LU632_RS04560 at 895.088 kb on + strand at 895.089 kb on - strand at 895.123 kb on - strand at 895.141 kb on + strand at 895.180 kb on + strand at 895.182 kb on + strand, within LU632_RS04565 at 895.328 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.450 kb on + strand, within LU632_RS04565 at 895.461 kb on - strand, within LU632_RS04565 at 895.461 kb on - strand, within LU632_RS04565 at 895.627 kb on + strand, within LU632_RS04570 at 895.627 kb on + strand, within LU632_RS04570 at 895.632 kb on - strand, within LU632_RS04570 at 895.632 kb on - strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570 at 895.716 kb on + strand, within LU632_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 894,497 - LU632_RS04560 0.39 +1.1 894,587 - LU632_RS04560 0.49 +1.7 894,594 + LU632_RS04560 0.50 -1.5 894,595 - LU632_RS04560 0.50 -0.1 894,675 + LU632_RS04560 0.58 +0.0 894,676 - LU632_RS04560 0.58 +0.4 894,676 - LU632_RS04560 0.58 +0.0 894,690 - LU632_RS04560 0.60 +0.7 894,692 + LU632_RS04560 0.60 -0.7 894,807 - LU632_RS04560 0.72 -0.9 894,814 + LU632_RS04560 0.73 -0.8 894,814 + LU632_RS04560 0.73 -1.1 894,814 + LU632_RS04560 0.73 -0.6 894,814 + LU632_RS04560 0.73 +1.3 894,814 + LU632_RS04560 0.73 -0.9 894,815 - LU632_RS04560 0.73 +0.9 894,815 - LU632_RS04560 0.73 +0.6 894,816 + LU632_RS04560 0.73 -0.6 894,816 + LU632_RS04560 0.73 +2.6 894,816 + LU632_RS04560 0.73 -1.1 894,850 - LU632_RS04560 0.77 -0.6 895,088 + +1.1 895,089 - -0.4 895,123 - -0.6 895,141 + +1.4 895,180 + +0.2 895,182 + LU632_RS04565 0.10 -2.1 895,328 + LU632_RS04565 0.45 -0.1 895,450 + LU632_RS04565 0.74 -0.2 895,450 + LU632_RS04565 0.74 -0.6 895,450 + LU632_RS04565 0.74 +0.4 895,461 - LU632_RS04565 0.77 -0.7 895,461 - LU632_RS04565 0.77 -1.2 895,627 + LU632_RS04570 0.31 -0.9 895,627 + LU632_RS04570 0.31 -0.6 895,632 - LU632_RS04570 0.32 -1.6 895,632 - LU632_RS04570 0.32 +1.0 895,716 + LU632_RS04570 0.52 +0.4 895,716 + LU632_RS04570 0.52 +0.5 895,716 + LU632_RS04570 0.52 -0.9
Or see this region's nucleotide sequence