Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04385 and LU632_RS04390 overlap by 7 nucleotides LU632_RS04390 and LU632_RS04395 are separated by 27 nucleotides LU632_RS04395 and LU632_RS04400 are separated by 27 nucleotides
LU632_RS04385: LU632_RS04385 - hypothetical protein, at 867,174 to 867,617
_RS04385
LU632_RS04390: LU632_RS04390 - N-acetylmuramoyl-L-alanine amidase, at 867,611 to 868,225
_RS04390
LU632_RS04395: LU632_RS04395 - type VI secretion system tube protein Hcp, at 868,253 to 868,735
_RS04395
LU632_RS04400: LU632_RS04400 - recombinase family protein, at 868,763 to 869,344
_RS04400
Position (kb) 867
868
869 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 866.834 kb on + strand at 866.935 kb on + strand at 866.935 kb on + strand at 866.960 kb on + strand at 866.961 kb on - strand at 866.961 kb on - strand at 866.965 kb on - strand at 866.970 kb on + strand at 866.994 kb on - strand at 867.046 kb on - strand at 867.115 kb on + strand at 867.115 kb on + strand at 867.116 kb on - strand at 867.154 kb on - strand at 867.173 kb on - strand at 867.202 kb on + strand at 867.203 kb on - strand at 867.203 kb on - strand at 867.206 kb on + strand at 867.207 kb on - strand at 867.252 kb on + strand, within LU632_RS04385 at 867.252 kb on + strand, within LU632_RS04385 at 867.253 kb on - strand, within LU632_RS04385 at 867.318 kb on - strand, within LU632_RS04385 at 867.423 kb on + strand, within LU632_RS04385 at 867.423 kb on + strand, within LU632_RS04385 at 867.424 kb on - strand, within LU632_RS04385 at 867.762 kb on - strand, within LU632_RS04390 at 868.139 kb on - strand, within LU632_RS04390 at 868.229 kb on + strand at 868.391 kb on - strand, within LU632_RS04395 at 868.391 kb on - strand, within LU632_RS04395 at 868.501 kb on + strand, within LU632_RS04395 at 868.554 kb on + strand, within LU632_RS04395 at 868.554 kb on + strand, within LU632_RS04395 at 868.555 kb on - strand, within LU632_RS04395 at 868.973 kb on - strand, within LU632_RS04400 at 868.973 kb on - strand, within LU632_RS04400 at 869.006 kb on + strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.159 kb on - strand, within LU632_RS04400
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 866,834 + -1.7 866,935 + +1.7 866,935 + +0.1 866,960 + +1.4 866,961 - -0.2 866,961 - +0.9 866,965 - -0.9 866,970 + -0.3 866,994 - -1.8 867,046 - +1.1 867,115 + -0.5 867,115 + +0.3 867,116 - -0.9 867,154 - +0.1 867,173 - -0.0 867,202 + +2.0 867,203 - +1.4 867,203 - -0.9 867,206 + +0.7 867,207 - +0.7 867,252 + LU632_RS04385 0.18 +1.0 867,252 + LU632_RS04385 0.18 -0.3 867,253 - LU632_RS04385 0.18 +1.2 867,318 - LU632_RS04385 0.32 +0.0 867,423 + LU632_RS04385 0.56 +1.3 867,423 + LU632_RS04385 0.56 -0.2 867,424 - LU632_RS04385 0.56 +0.2 867,762 - LU632_RS04390 0.25 +0.0 868,139 - LU632_RS04390 0.86 +0.3 868,229 + -1.0 868,391 - LU632_RS04395 0.29 -0.4 868,391 - LU632_RS04395 0.29 +0.4 868,501 + LU632_RS04395 0.51 +3.9 868,554 + LU632_RS04395 0.62 +1.2 868,554 + LU632_RS04395 0.62 -0.6 868,555 - LU632_RS04395 0.63 -0.3 868,973 - LU632_RS04400 0.36 +1.2 868,973 - LU632_RS04400 0.36 +0.6 869,006 + LU632_RS04400 0.42 -0.1 869,007 - LU632_RS04400 0.42 -0.0 869,007 - LU632_RS04400 0.42 -0.1 869,046 + LU632_RS04400 0.49 -1.8 869,046 + LU632_RS04400 0.49 +5.1 869,159 - LU632_RS04400 0.68 +1.4
Or see this region's nucleotide sequence