Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04385

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
866,210	+		LU632_RS04380	0.71	-1.4
866,211	-		LU632_RS04380	0.71	-3.4
866,392	-				-0.8
866,425	+				-1.7
866,427	+				+1.3
866,473	-				-2.5
866,473	-				+1.1
866,478	-				-1.1
866,478	-				+0.8
866,480	-				-0.5
866,517	+				+1.4
866,517	+				-1.0
866,517	+				+0.1
866,519	+				-2.2
866,519	+				-0.8
866,519	+				+5.2
866,575	+				-0.8
866,576	-				-1.0
866,582	+				-0.6
866,582	+				+1.3
866,834	+				-1.7
866,935	+				+1.7
866,935	+				+0.1
866,960	+				+1.4
866,961	-				-0.2
866,961	-				+0.9
866,965	-				-0.9
866,970	+				-0.3
866,994	-				-1.8
867,046	-				+1.1
867,115	+				-0.5
867,115	+				+0.3
867,116	-				-0.9
867,154	-				+0.1
867,173	-				-0.0
867,202	+				+2.0
867,203	-				+1.4
867,203	-				-0.9
867,206	+				+0.7
867,207	-				+0.7
867,252	+		LU632_RS04385	0.18	+1.0
867,252	+		LU632_RS04385	0.18	-0.3
867,253	-		LU632_RS04385	0.18	+1.2
867,318	-		LU632_RS04385	0.32	+0.0
867,423	+		LU632_RS04385	0.56	+1.3
867,423	+		LU632_RS04385	0.56	-0.2
867,424	-		LU632_RS04385	0.56	+0.2
867,762	-		LU632_RS04390	0.25	+0.0
868,139	-		LU632_RS04390	0.86	+0.3
868,229	+				-1.0
868,391	-		LU632_RS04395	0.29	-0.4
868,391	-		LU632_RS04395	0.29	+0.4
868,501	+		LU632_RS04395	0.51	+3.9
868,554	+		LU632_RS04395	0.62	+1.2
868,554	+		LU632_RS04395	0.62	-0.6
868,555	-		LU632_RS04395	0.63	-0.3