Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04375

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
863,612	+				-0.1
863,612	+				-0.1
863,655	-				-0.1
863,655	-				-0.2
863,659	-				-0.5
863,659	-				+0.2
863,663	+				+0.5
863,663	+				+0.3
863,664	-				-1.4
863,683	-				+0.3
863,795	+				+1.6
863,806	+				-1.0
863,972	-				-0.0
864,042	-				-0.4
864,042	-				+0.6
864,042	-				+0.8
864,075	+				+2.9
864,075	+				-1.8
864,076	-				+0.4
864,102	-				-0.4
864,122	+				+0.7
864,122	+				-0.4
864,122	+				-0.2
864,123	-				-1.2
864,126	+				+0.1
864,126	+				-0.8
864,177	+				-1.1
864,229	-		LU632_RS04370	0.31	+0.4
864,252	+		LU632_RS04370	0.41	+0.7
864,272	+		LU632_RS04370	0.50	+1.7
864,342	-		LU632_RS04370	0.80	+0.6
864,342	-		LU632_RS04370	0.80	-1.1
864,415	-				+0.9
865,942	-		LU632_RS04380	0.23	+2.1
866,075	-		LU632_RS04380	0.47	-0.7
866,075	-		LU632_RS04380	0.47	-0.4
866,075	-		LU632_RS04380	0.47	+0.4
866,134	+		LU632_RS04380	0.57	-1.6
866,210	+		LU632_RS04380	0.71	-1.4
866,211	-		LU632_RS04380	0.71	-3.4
866,392	-				-0.8
866,425	+				-1.7
866,427	+				+1.3
866,473	-				-2.5
866,473	-				+1.1
866,478	-				-1.1
866,478	-				+0.8
866,480	-				-0.5
866,517	+				+1.4
866,517	+				-1.0
866,517	+				+0.1
866,519	+				-2.2
866,519	+				-0.8
866,519	+				+5.2
866,575	+				-0.8
866,576	-				-1.0
866,582	+				-0.6
866,582	+				+1.3