Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04255

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
845,454	+				-1.1
845,563	+	yiaK	LU632_RS04250	0.16	+0.1
845,564	-	yiaK	LU632_RS04250	0.16	-3.6
845,699	-	yiaK	LU632_RS04250	0.29	-1.5
845,923	+	yiaK	LU632_RS04250	0.52	-1.3
846,021	-	yiaK	LU632_RS04250	0.61	-1.2
846,097	+	yiaK	LU632_RS04250	0.69	-1.4
846,130	+	yiaK	LU632_RS04250	0.72	-0.6
846,434	+				-1.2
846,489	+		LU632_RS04255	0.15	+2.0
846,490	-		LU632_RS04255	0.15	-0.7
846,636	+		LU632_RS04255	0.46	-0.0
846,636	+		LU632_RS04255	0.46	+1.5
846,821	+		LU632_RS04255	0.86	+0.4
846,821	+		LU632_RS04255	0.86	-0.9
846,901	+				-1.2
846,901	+				-0.1
846,902	-				+0.1
846,913	-				-0.8
846,985	+				-0.6
846,995	-				+0.6
847,002	-				-1.0
847,578	+		LU632_RS04260	0.52	-1.1
847,579	-		LU632_RS04260	0.52	-0.3
847,646	-		LU632_RS04260	0.57	-1.9
847,664	+		LU632_RS04260	0.59	-1.2
847,688	-		LU632_RS04260	0.61	-0.7
847,767	-		LU632_RS04260	0.67	+0.4