Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04240 and LU632_RS04245 are separated by 10 nucleotides LU632_RS04245 and yiaK are separated by 316 nucleotides
LU632_RS04240: LU632_RS04240 - substrate-binding domain-containing protein, at 843,129 to 844,229
_RS04240
LU632_RS04245: LU632_RS04245 - SMP-30/gluconolactonase/LRE family protein, at 844,240 to 845,091
_RS04245
LU632_RS04250: yiaK - 3-dehydro-L-gulonate 2-dehydrogenase, at 845,408 to 846,406
yiaK
Position (kb) 844
845
846 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 843.588 kb on + strand, within LU632_RS04240 at 843.849 kb on + strand, within LU632_RS04240 at 843.849 kb on + strand, within LU632_RS04240 at 843.849 kb on + strand, within LU632_RS04240 at 843.957 kb on - strand, within LU632_RS04240 at 844.045 kb on + strand, within LU632_RS04240 at 844.046 kb on - strand, within LU632_RS04240 at 844.046 kb on - strand, within LU632_RS04240 at 844.046 kb on - strand, within LU632_RS04240 at 844.192 kb on - strand at 844.240 kb on - strand at 844.240 kb on - strand at 844.359 kb on + strand, within LU632_RS04245 at 844.359 kb on + strand, within LU632_RS04245 at 844.360 kb on - strand, within LU632_RS04245 at 844.607 kb on - strand, within LU632_RS04245 at 844.611 kb on + strand, within LU632_RS04245 at 844.624 kb on - strand, within LU632_RS04245 at 844.718 kb on + strand, within LU632_RS04245 at 844.765 kb on + strand, within LU632_RS04245 at 844.765 kb on + strand, within LU632_RS04245 at 844.766 kb on - strand, within LU632_RS04245 at 844.766 kb on - strand, within LU632_RS04245 at 844.766 kb on - strand, within LU632_RS04245 at 844.766 kb on - strand, within LU632_RS04245 at 844.766 kb on - strand, within LU632_RS04245 at 844.777 kb on - strand, within LU632_RS04245 at 844.857 kb on + strand, within LU632_RS04245 at 844.929 kb on + strand, within LU632_RS04245 at 845.044 kb on + strand at 845.044 kb on + strand at 845.044 kb on + strand at 845.044 kb on + strand at 845.045 kb on - strand at 845.045 kb on - strand at 845.045 kb on - strand at 845.045 kb on - strand at 845.045 kb on - strand at 845.076 kb on - strand at 845.080 kb on - strand at 845.089 kb on + strand at 845.090 kb on - strand at 845.115 kb on - strand at 845.115 kb on - strand at 845.186 kb on + strand at 845.186 kb on + strand at 845.267 kb on - strand at 845.454 kb on + strand at 845.563 kb on + strand, within yiaK at 845.564 kb on - strand, within yiaK at 845.699 kb on - strand, within yiaK at 845.923 kb on + strand, within yiaK at 846.021 kb on - strand, within yiaK
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 843,588 + LU632_RS04240 0.42 -0.8 843,849 + LU632_RS04240 0.65 -0.1 843,849 + LU632_RS04240 0.65 -1.3 843,849 + LU632_RS04240 0.65 +0.3 843,957 - LU632_RS04240 0.75 -0.9 844,045 + LU632_RS04240 0.83 -0.5 844,046 - LU632_RS04240 0.83 +1.1 844,046 - LU632_RS04240 0.83 +1.3 844,046 - LU632_RS04240 0.83 +0.4 844,192 - +1.8 844,240 - -0.5 844,240 - +1.7 844,359 + LU632_RS04245 0.14 -0.4 844,359 + LU632_RS04245 0.14 +2.4 844,360 - LU632_RS04245 0.14 +2.6 844,607 - LU632_RS04245 0.43 -0.6 844,611 + LU632_RS04245 0.44 +1.1 844,624 - LU632_RS04245 0.45 -1.8 844,718 + LU632_RS04245 0.56 +2.7 844,765 + LU632_RS04245 0.62 +1.3 844,765 + LU632_RS04245 0.62 +2.8 844,766 - LU632_RS04245 0.62 +1.6 844,766 - LU632_RS04245 0.62 +0.5 844,766 - LU632_RS04245 0.62 -1.2 844,766 - LU632_RS04245 0.62 +2.1 844,766 - LU632_RS04245 0.62 +0.2 844,777 - LU632_RS04245 0.63 -0.2 844,857 + LU632_RS04245 0.72 -1.9 844,929 + LU632_RS04245 0.81 -0.1 845,044 + -2.7 845,044 + +0.4 845,044 + +0.5 845,044 + +2.4 845,045 - +1.4 845,045 - -0.9 845,045 - -1.6 845,045 - -0.1 845,045 - -0.2 845,076 - +0.2 845,080 - -0.6 845,089 + +0.7 845,090 - -0.2 845,115 - +0.4 845,115 - +1.3 845,186 + +3.4 845,186 + +0.7 845,267 - +1.1 845,454 + -1.1 845,563 + yiaK LU632_RS04250 0.16 +0.1 845,564 - yiaK LU632_RS04250 0.16 -3.6 845,699 - yiaK LU632_RS04250 0.29 -1.5 845,923 + yiaK LU632_RS04250 0.52 -1.3 846,021 - yiaK LU632_RS04250 0.61 -1.2
Or see this region's nucleotide sequence