Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt istB and LU632_RS04155 are separated by 554 nucleotides LU632_RS04155 and LU632_RS04160 are separated by 217 nucleotides
LU632_RS04150: istB - IS21-like element helper ATPase IstB, at 822,538 to 823,281
istB
LU632_RS04155: LU632_RS04155 - polysaccharide lyase family protein, at 823,836 to 825,554
_RS04155
LU632_RS04160: LU632_RS04160 - KdgM family transporter, at 825,772 to 826,515
_RS04160
Position (kb) 823
824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 822.988 kb on + strand, within istB at 823.392 kb on - strand at 823.550 kb on + strand at 823.551 kb on - strand at 823.890 kb on + strand at 823.898 kb on + strand at 823.994 kb on + strand at 823.994 kb on + strand at 823.995 kb on - strand at 824.016 kb on - strand, within LU632_RS04155 at 824.157 kb on - strand, within LU632_RS04155 at 824.168 kb on + strand, within LU632_RS04155 at 824.210 kb on + strand, within LU632_RS04155 at 824.211 kb on - strand, within LU632_RS04155 at 824.236 kb on - strand, within LU632_RS04155 at 824.238 kb on - strand, within LU632_RS04155 at 824.238 kb on - strand, within LU632_RS04155 at 824.238 kb on - strand, within LU632_RS04155 at 824.238 kb on - strand, within LU632_RS04155 at 824.238 kb on - strand, within LU632_RS04155 at 824.242 kb on - strand, within LU632_RS04155 at 824.331 kb on - strand, within LU632_RS04155 at 824.361 kb on + strand, within LU632_RS04155 at 824.361 kb on + strand, within LU632_RS04155 at 824.368 kb on - strand, within LU632_RS04155 at 824.385 kb on - strand, within LU632_RS04155 at 824.507 kb on - strand, within LU632_RS04155 at 824.515 kb on + strand, within LU632_RS04155 at 824.515 kb on + strand, within LU632_RS04155 at 824.515 kb on + strand, within LU632_RS04155 at 824.516 kb on - strand, within LU632_RS04155 at 824.546 kb on + strand, within LU632_RS04155 at 824.551 kb on + strand, within LU632_RS04155 at 824.551 kb on + strand, within LU632_RS04155 at 824.586 kb on - strand, within LU632_RS04155 at 824.615 kb on - strand, within LU632_RS04155 at 824.615 kb on - strand, within LU632_RS04155 at 824.677 kb on - strand, within LU632_RS04155 at 824.872 kb on + strand, within LU632_RS04155 at 824.940 kb on + strand, within LU632_RS04155 at 824.960 kb on + strand, within LU632_RS04155 at 825.137 kb on + strand, within LU632_RS04155 at 825.137 kb on + strand, within LU632_RS04155 at 825.141 kb on + strand, within LU632_RS04155 at 825.217 kb on - strand, within LU632_RS04155 at 825.361 kb on + strand, within LU632_RS04155 at 825.453 kb on - strand at 825.453 kb on - strand at 825.492 kb on - strand at 825.528 kb on + strand at 825.529 kb on - strand at 825.529 kb on - strand at 825.536 kb on + strand at 825.537 kb on - strand at 825.540 kb on - strand at 825.663 kb on + strand at 825.722 kb on - strand at 825.969 kb on + strand, within LU632_RS04160 at 826.011 kb on + strand, within LU632_RS04160 at 826.012 kb on - strand, within LU632_RS04160 at 826.023 kb on - strand, within LU632_RS04160 at 826.105 kb on - strand, within LU632_RS04160 at 826.147 kb on + strand, within LU632_RS04160 at 826.158 kb on + strand, within LU632_RS04160 at 826.365 kb on + strand, within LU632_RS04160 at 826.366 kb on - strand, within LU632_RS04160 at 826.370 kb on - strand, within LU632_RS04160 at 826.383 kb on - strand, within LU632_RS04160 at 826.427 kb on - strand, within LU632_RS04160 at 826.443 kb on + strand at 826.446 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 822,988 + istB LU632_RS04150 0.60 -0.9 823,392 - -0.3 823,550 + -0.1 823,551 - -0.1 823,890 + -0.2 823,898 + +1.9 823,994 + +1.1 823,994 + -0.6 823,995 - -0.6 824,016 - LU632_RS04155 0.10 -1.2 824,157 - LU632_RS04155 0.19 -0.3 824,168 + LU632_RS04155 0.19 -1.2 824,210 + LU632_RS04155 0.22 -1.2 824,211 - LU632_RS04155 0.22 -0.1 824,236 - LU632_RS04155 0.23 +0.2 824,238 - LU632_RS04155 0.23 -0.2 824,238 - LU632_RS04155 0.23 -0.2 824,238 - LU632_RS04155 0.23 -1.9 824,238 - LU632_RS04155 0.23 -0.2 824,238 - LU632_RS04155 0.23 +0.3 824,242 - LU632_RS04155 0.24 +0.9 824,331 - LU632_RS04155 0.29 -0.3 824,361 + LU632_RS04155 0.31 -0.1 824,361 + LU632_RS04155 0.31 +0.1 824,368 - LU632_RS04155 0.31 -0.2 824,385 - LU632_RS04155 0.32 +1.5 824,507 - LU632_RS04155 0.39 +0.2 824,515 + LU632_RS04155 0.39 +1.1 824,515 + LU632_RS04155 0.39 -0.2 824,515 + LU632_RS04155 0.39 +1.3 824,516 - LU632_RS04155 0.40 -0.6 824,546 + LU632_RS04155 0.41 +0.1 824,551 + LU632_RS04155 0.42 -3.1 824,551 + LU632_RS04155 0.42 +0.5 824,586 - LU632_RS04155 0.44 +0.2 824,615 - LU632_RS04155 0.45 +2.2 824,615 - LU632_RS04155 0.45 -0.6 824,677 - LU632_RS04155 0.49 +1.0 824,872 + LU632_RS04155 0.60 -1.2 824,940 + LU632_RS04155 0.64 +0.0 824,960 + LU632_RS04155 0.65 -0.3 825,137 + LU632_RS04155 0.76 -2.7 825,137 + LU632_RS04155 0.76 +0.4 825,141 + LU632_RS04155 0.76 +1.0 825,217 - LU632_RS04155 0.80 -2.2 825,361 + LU632_RS04155 0.89 +1.1 825,453 - +0.9 825,453 - -0.3 825,492 - -0.5 825,528 + -0.7 825,529 - +1.4 825,529 - -3.1 825,536 + +2.4 825,537 - +1.5 825,540 - -2.0 825,663 + +1.5 825,722 - -0.6 825,969 + LU632_RS04160 0.26 -0.0 826,011 + LU632_RS04160 0.32 -0.6 826,012 - LU632_RS04160 0.32 -0.2 826,023 - LU632_RS04160 0.34 +1.2 826,105 - LU632_RS04160 0.45 -0.3 826,147 + LU632_RS04160 0.50 +1.6 826,158 + LU632_RS04160 0.52 -0.8 826,365 + LU632_RS04160 0.80 -0.9 826,366 - LU632_RS04160 0.80 -1.2 826,370 - LU632_RS04160 0.80 -2.3 826,383 - LU632_RS04160 0.82 +0.8 826,427 - LU632_RS04160 0.88 -0.2 826,443 + +0.6 826,446 + -0.5
Or see this region's nucleotide sequence