Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04095

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04090 and LU632_RS04095 are separated by 37 nucleotidesLU632_RS04095 and LU632_RS04100 overlap by 82 nucleotidesLU632_RS04100 and LU632_RS04105 are separated by 127 nucleotides LU632_RS04090: LU632_RS04090 - IS3 family transposase, at 815,090 to 815,859 _RS04090 LU632_RS04095: LU632_RS04095 - IS1 family transposase, at 815,897 to 816,400 _RS04095 LU632_RS04100: LU632_RS04100 - IS1-like element transposase, at 816,319 to 816,594 _RS04100 LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663 _RS04105 Position (kb) 815 816 817Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 814.912 kb on + strandat 814.915 kb on + strandat 814.916 kb on - strandat 814.935 kb on + strandat 814.956 kb on + strandat 815.074 kb on + strandat 815.163 kb on + strandat 815.178 kb on + strand, within LU632_RS04090at 815.178 kb on + strand, within LU632_RS04090at 815.179 kb on - strand, within LU632_RS04090at 815.182 kb on + strand, within LU632_RS04090at 815.182 kb on + strand, within LU632_RS04090at 815.182 kb on + strand, within LU632_RS04090at 815.183 kb on - strand, within LU632_RS04090at 815.183 kb on - strand, within LU632_RS04090at 815.233 kb on + strand, within LU632_RS04090at 815.294 kb on - strand, within LU632_RS04090at 815.332 kb on - strand, within LU632_RS04090at 815.429 kb on - strand, within LU632_RS04090at 815.491 kb on + strand, within LU632_RS04090at 815.517 kb on - strand, within LU632_RS04090at 815.517 kb on - strand, within LU632_RS04090at 815.517 kb on - strand, within LU632_RS04090at 815.580 kb on + strand, within LU632_RS04090at 815.580 kb on + strand, within LU632_RS04090at 815.580 kb on + strand, within LU632_RS04090at 815.588 kb on - strand, within LU632_RS04090at 815.690 kb on + strand, within LU632_RS04090at 815.755 kb on - strand, within LU632_RS04090at 815.828 kb on + strandat 815.828 kb on + strandat 815.829 kb on - strandat 815.829 kb on - strandat 815.829 kb on - strandat 815.829 kb on - strandat 816.619 kb on + strandat 816.651 kb on + strandat 816.652 kb on - strandat 816.654 kb on + strandat 816.654 kb on + strandat 816.655 kb on - strandat 816.655 kb on - strandat 816.655 kb on - strandat 816.756 kb on + strandat 816.779 kb on - strandat 816.856 kb on + strand, within LU632_RS04105at 816.857 kb on - strand, within LU632_RS04105at 816.900 kb on - strand, within LU632_RS04105at 817.082 kb on + strand, within LU632_RS04105at 817.098 kb on - strand, within LU632_RS04105at 817.098 kb on - strand, within LU632_RS04105at 817.098 kb on - strand, within LU632_RS04105at 817.133 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.203 kb on + strand, within LU632_RS04105at 817.204 kb on - strand, within LU632_RS04105at 817.204 kb on - strand, within LU632_RS04105at 817.373 kb on + strand, within LU632_RS04105at 817.373 kb on + strand, within LU632_RS04105at 817.374 kb on - strand, within LU632_RS04105at 817.374 kb on - strand, within LU632_RS04105at 817.393 kb on + strand, within LU632_RS04105

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA
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814,912 + -0.3
814,915 + +0.4
814,916 - +1.3
814,935 + +1.4
814,956 + -1.9
815,074 + +1.9
815,163 + +0.4
815,178 + LU632_RS04090 0.11 -0.2
815,178 + LU632_RS04090 0.11 +0.5
815,179 - LU632_RS04090 0.12 -2.3
815,182 + LU632_RS04090 0.12 -1.5
815,182 + LU632_RS04090 0.12 -0.8
815,182 + LU632_RS04090 0.12 -0.6
815,183 - LU632_RS04090 0.12 +0.4
815,183 - LU632_RS04090 0.12 +0.6
815,233 + LU632_RS04090 0.19 +1.9
815,294 - LU632_RS04090 0.26 +0.4
815,332 - LU632_RS04090 0.31 +2.0
815,429 - LU632_RS04090 0.44 -1.3
815,491 + LU632_RS04090 0.52 -2.1
815,517 - LU632_RS04090 0.55 -0.4
815,517 - LU632_RS04090 0.55 -0.9
815,517 - LU632_RS04090 0.55 -0.2
815,580 + LU632_RS04090 0.64 +0.9
815,580 + LU632_RS04090 0.64 +0.2
815,580 + LU632_RS04090 0.64 +2.0
815,588 - LU632_RS04090 0.65 +0.1
815,690 + LU632_RS04090 0.78 -0.2
815,755 - LU632_RS04090 0.86 +0.4
815,828 + -1.4
815,828 + -0.3
815,829 - +0.4
815,829 - +1.6
815,829 - -2.8
815,829 - -2.2
816,619 + +0.0
816,651 + +1.0
816,652 - +0.9
816,654 + +1.2
816,654 + +0.3
816,655 - +0.2
816,655 - +0.2
816,655 - -1.4
816,756 + -1.2
816,779 - +1.0
816,856 + LU632_RS04105 0.14 -1.8
816,857 - LU632_RS04105 0.14 +0.3
816,900 - LU632_RS04105 0.19 +1.3
817,082 + LU632_RS04105 0.38 -1.0
817,098 - LU632_RS04105 0.40 +0.2
817,098 - LU632_RS04105 0.40 +3.6
817,098 - LU632_RS04105 0.40 +0.4
817,133 + LU632_RS04105 0.44 +0.9
817,203 + LU632_RS04105 0.51 +1.0
817,203 + LU632_RS04105 0.51 +0.4
817,203 + LU632_RS04105 0.51 -0.9
817,203 + LU632_RS04105 0.51 +0.4
817,203 + LU632_RS04105 0.51 -0.3
817,204 - LU632_RS04105 0.51 -0.5
817,204 - LU632_RS04105 0.51 -0.2
817,373 + LU632_RS04105 0.69 -0.6
817,373 + LU632_RS04105 0.69 -0.1
817,374 - LU632_RS04105 0.69 +1.9
817,374 - LU632_RS04105 0.69 -0.4
817,393 + LU632_RS04105 0.71 +0.4

Or see this region's nucleotide sequence