Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03875 and tssH are separated by 422 nucleotides tssH and LU632_RS03885 are separated by 29 nucleotides
LU632_RS03875: LU632_RS03875 - DUF4225 domain-containing protein, at 772,813 to 773,574
_RS03875
LU632_RS03880: tssH - type VI secretion system ATPase TssH, at 773,997 to 776,612
tssH
LU632_RS03885: LU632_RS03885 - serine/threonine protein kinase, at 776,642 to 778,027
_RS03885
Position (kb) 773
774
775
776
777 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 773.075 kb on + strand, within LU632_RS03875 at 773.076 kb on - strand, within LU632_RS03875 at 773.076 kb on - strand, within LU632_RS03875 at 773.081 kb on - strand, within LU632_RS03875 at 773.081 kb on - strand, within LU632_RS03875 at 773.145 kb on - strand, within LU632_RS03875 at 773.198 kb on + strand, within LU632_RS03875 at 773.272 kb on + strand, within LU632_RS03875 at 773.272 kb on + strand, within LU632_RS03875 at 773.273 kb on - strand, within LU632_RS03875 at 773.367 kb on - strand, within LU632_RS03875 at 773.367 kb on - strand, within LU632_RS03875 at 773.377 kb on - strand, within LU632_RS03875 at 773.399 kb on - strand, within LU632_RS03875 at 773.400 kb on - strand, within LU632_RS03875 at 773.401 kb on + strand, within LU632_RS03875 at 773.556 kb on - strand at 773.556 kb on - strand at 773.578 kb on - strand at 773.589 kb on - strand at 773.589 kb on - strand at 773.854 kb on - strand at 773.854 kb on - strand at 774.039 kb on - strand at 774.046 kb on + strand at 774.047 kb on - strand at 774.097 kb on + strand at 774.099 kb on + strand at 774.099 kb on + strand at 774.121 kb on + strand at 774.121 kb on + strand at 774.121 kb on + strand at 774.122 kb on - strand at 774.155 kb on - strand at 774.155 kb on - strand at 774.346 kb on + strand, within tssH at 774.547 kb on - strand, within tssH at 774.632 kb on + strand, within tssH at 774.853 kb on + strand, within tssH at 774.853 kb on + strand, within tssH at 774.853 kb on + strand, within tssH at 774.854 kb on - strand, within tssH at 774.854 kb on - strand, within tssH at 775.012 kb on - strand, within tssH at 775.020 kb on + strand, within tssH at 775.178 kb on + strand, within tssH at 775.189 kb on - strand, within tssH at 775.194 kb on + strand, within tssH at 775.195 kb on - strand, within tssH at 775.723 kb on + strand, within tssH at 775.799 kb on + strand, within tssH at 775.817 kb on + strand, within tssH at 775.898 kb on + strand, within tssH at 775.911 kb on - strand, within tssH at 775.911 kb on - strand, within tssH at 775.913 kb on + strand, within tssH at 775.913 kb on + strand, within tssH at 775.913 kb on + strand, within tssH at 775.913 kb on + strand, within tssH at 775.914 kb on - strand, within tssH at 776.072 kb on - strand, within tssH at 776.311 kb on - strand, within tssH at 776.624 kb on - strand at 776.786 kb on - strand, within LU632_RS03885 at 776.803 kb on + strand, within LU632_RS03885 at 776.803 kb on + strand, within LU632_RS03885 at 776.952 kb on + strand, within LU632_RS03885 at 776.952 kb on + strand, within LU632_RS03885 at 776.953 kb on - strand, within LU632_RS03885 at 776.984 kb on + strand, within LU632_RS03885 at 776.984 kb on + strand, within LU632_RS03885 at 776.985 kb on - strand, within LU632_RS03885 at 777.122 kb on + strand, within LU632_RS03885 at 777.123 kb on - strand, within LU632_RS03885 at 777.136 kb on + strand, within LU632_RS03885 at 777.136 kb on + strand, within LU632_RS03885 at 777.137 kb on - strand, within LU632_RS03885 at 777.138 kb on + strand, within LU632_RS03885 at 777.139 kb on - strand, within LU632_RS03885 at 777.139 kb on - strand, within LU632_RS03885 at 777.139 kb on - strand, within LU632_RS03885 at 777.214 kb on + strand, within LU632_RS03885 at 777.215 kb on - strand, within LU632_RS03885 at 777.317 kb on - strand, within LU632_RS03885 at 777.389 kb on - strand, within LU632_RS03885 at 777.398 kb on - strand, within LU632_RS03885 at 777.398 kb on - strand, within LU632_RS03885 at 777.398 kb on - strand, within LU632_RS03885 at 777.401 kb on + strand, within LU632_RS03885 at 777.401 kb on + strand, within LU632_RS03885 at 777.402 kb on - strand, within LU632_RS03885 at 777.402 kb on - strand, within LU632_RS03885 at 777.402 kb on - strand, within LU632_RS03885
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 773,075 + LU632_RS03875 0.34 +0.4 773,076 - LU632_RS03875 0.35 +0.1 773,076 - LU632_RS03875 0.35 -0.8 773,081 - LU632_RS03875 0.35 -0.3 773,081 - LU632_RS03875 0.35 +0.6 773,145 - LU632_RS03875 0.44 -0.9 773,198 + LU632_RS03875 0.51 -1.6 773,272 + LU632_RS03875 0.60 -1.8 773,272 + LU632_RS03875 0.60 +0.2 773,273 - LU632_RS03875 0.60 -0.5 773,367 - LU632_RS03875 0.73 +1.5 773,367 - LU632_RS03875 0.73 +1.3 773,377 - LU632_RS03875 0.74 -0.9 773,399 - LU632_RS03875 0.77 +1.8 773,400 - LU632_RS03875 0.77 -0.2 773,401 + LU632_RS03875 0.77 -0.6 773,556 - -0.2 773,556 - -1.4 773,578 - +0.2 773,589 - -2.5 773,589 - +0.7 773,854 - -0.4 773,854 - -1.5 774,039 - +0.5 774,046 + -0.2 774,047 - +0.6 774,097 + +1.0 774,099 + +0.1 774,099 + +0.3 774,121 + +3.2 774,121 + -1.8 774,121 + -0.5 774,122 - +0.0 774,155 - +1.1 774,155 - +0.6 774,346 + tssH LU632_RS03880 0.13 +0.4 774,547 - tssH LU632_RS03880 0.21 -1.0 774,632 + tssH LU632_RS03880 0.24 -0.3 774,853 + tssH LU632_RS03880 0.33 -0.3 774,853 + tssH LU632_RS03880 0.33 -0.7 774,853 + tssH LU632_RS03880 0.33 -0.2 774,854 - tssH LU632_RS03880 0.33 -0.1 774,854 - tssH LU632_RS03880 0.33 -0.0 775,012 - tssH LU632_RS03880 0.39 -2.1 775,020 + tssH LU632_RS03880 0.39 -0.1 775,178 + tssH LU632_RS03880 0.45 -0.6 775,189 - tssH LU632_RS03880 0.46 -2.3 775,194 + tssH LU632_RS03880 0.46 +0.4 775,195 - tssH LU632_RS03880 0.46 -0.9 775,723 + tssH LU632_RS03880 0.66 +0.4 775,799 + tssH LU632_RS03880 0.69 +1.4 775,817 + tssH LU632_RS03880 0.70 +2.8 775,898 + tssH LU632_RS03880 0.73 -1.9 775,911 - tssH LU632_RS03880 0.73 -0.1 775,911 - tssH LU632_RS03880 0.73 -0.3 775,913 + tssH LU632_RS03880 0.73 -2.6 775,913 + tssH LU632_RS03880 0.73 +1.4 775,913 + tssH LU632_RS03880 0.73 -1.6 775,913 + tssH LU632_RS03880 0.73 +0.4 775,914 - tssH LU632_RS03880 0.73 -0.0 776,072 - tssH LU632_RS03880 0.79 +2.8 776,311 - tssH LU632_RS03880 0.88 -0.9 776,624 - -0.0 776,786 - LU632_RS03885 0.10 -0.5 776,803 + LU632_RS03885 0.12 -0.9 776,803 + LU632_RS03885 0.12 +0.0 776,952 + LU632_RS03885 0.22 +0.4 776,952 + LU632_RS03885 0.22 -0.1 776,953 - LU632_RS03885 0.22 +1.8 776,984 + LU632_RS03885 0.25 +1.8 776,984 + LU632_RS03885 0.25 -2.5 776,985 - LU632_RS03885 0.25 +0.3 777,122 + LU632_RS03885 0.35 +1.4 777,123 - LU632_RS03885 0.35 -0.6 777,136 + LU632_RS03885 0.36 +2.1 777,136 + LU632_RS03885 0.36 -0.6 777,137 - LU632_RS03885 0.36 -0.1 777,138 + LU632_RS03885 0.36 -0.1 777,139 - LU632_RS03885 0.36 -0.3 777,139 - LU632_RS03885 0.36 +0.5 777,139 - LU632_RS03885 0.36 +0.5 777,214 + LU632_RS03885 0.41 -1.6 777,215 - LU632_RS03885 0.41 -0.1 777,317 - LU632_RS03885 0.49 -2.5 777,389 - LU632_RS03885 0.54 +0.7 777,398 - LU632_RS03885 0.55 +0.8 777,398 - LU632_RS03885 0.55 -1.2 777,398 - LU632_RS03885 0.55 +1.8 777,401 + LU632_RS03885 0.55 +0.9 777,401 + LU632_RS03885 0.55 +0.4 777,402 - LU632_RS03885 0.55 -1.8 777,402 - LU632_RS03885 0.55 +0.7 777,402 - LU632_RS03885 0.55 +0.1
Or see this region's nucleotide sequence