Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03345 and LU632_RS03350 are separated by 380 nucleotides LU632_RS03350 and LU632_RS03355 are separated by 761 nucleotides
LU632_RS03345: LU632_RS03345 - iron ABC transporter substrate-binding protein, at 686,169 to 687,173
_RS03345
LU632_RS03350: LU632_RS03350 - IS5 family transposase, at 687,554 to 688,397
_RS03350
LU632_RS03355: LU632_RS03355 - hypothetical protein, at 689,159 to 689,371
_RS03355
Position (kb) 687
688
689 Strain fitness (log2 ratio) -2
-1
0
1
2 at 686.577 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 687.033 kb on - strand, within LU632_RS03345 at 687.156 kb on - strand at 687.204 kb on + strand at 687.205 kb on - strand at 687.295 kb on + strand at 687.381 kb on + strand at 687.382 kb on - strand at 687.424 kb on + strand at 687.425 kb on - strand at 687.457 kb on - strand at 687.467 kb on - strand at 687.475 kb on - strand at 687.503 kb on + strand at 687.513 kb on + strand at 687.513 kb on + strand at 687.513 kb on + strand at 687.514 kb on - strand at 687.514 kb on - strand at 687.555 kb on + strand at 687.560 kb on - strand at 687.631 kb on + strand at 688.430 kb on + strand at 688.473 kb on - strand at 688.501 kb on - strand at 688.501 kb on - strand at 688.511 kb on + strand at 688.586 kb on + strand at 688.604 kb on - strand at 688.617 kb on + strand at 688.618 kb on - strand at 688.644 kb on + strand at 688.648 kb on + strand at 688.648 kb on + strand at 688.730 kb on - strand at 688.747 kb on + strand at 688.747 kb on + strand at 688.748 kb on - strand at 688.748 kb on - strand at 688.811 kb on - strand at 688.811 kb on - strand at 688.815 kb on - strand at 688.920 kb on - strand at 688.920 kb on - strand at 689.106 kb on + strand at 689.107 kb on - strand at 689.172 kb on + strand at 689.172 kb on + strand at 689.303 kb on - strand, within LU632_RS03355 at 689.306 kb on + strand, within LU632_RS03355 at 689.307 kb on - strand, within LU632_RS03355 at 689.307 kb on - strand, within LU632_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 686,577 - LU632_RS03345 0.41 -0.2 686,910 - LU632_RS03345 0.74 +0.8 686,910 - LU632_RS03345 0.74 -0.8 686,910 - LU632_RS03345 0.74 -1.4 687,033 - LU632_RS03345 0.86 -0.7 687,156 - -1.2 687,204 + +0.2 687,205 - -2.6 687,295 + +0.3 687,381 + -0.5 687,382 - +0.4 687,424 + +0.4 687,425 - +0.2 687,457 - +2.1 687,467 - +0.3 687,475 - -0.3 687,503 + -0.4 687,513 + +0.7 687,513 + -1.2 687,513 + +2.0 687,514 - +0.4 687,514 - +0.5 687,555 + +1.6 687,560 - +0.4 687,631 + +0.1 688,430 + -0.5 688,473 - -1.4 688,501 - +0.1 688,501 - +1.0 688,511 + +0.5 688,586 + +0.4 688,604 - +1.4 688,617 + -0.1 688,618 - -0.6 688,644 + -0.2 688,648 + +0.6 688,648 + -0.3 688,730 - +0.0 688,747 + -0.5 688,747 + +0.4 688,748 - -1.6 688,748 - -1.3 688,811 - +0.5 688,811 - +0.0 688,815 - -0.3 688,920 - -2.2 688,920 - +0.1 689,106 + -1.9 689,107 - -1.4 689,172 + -0.9 689,172 + -1.1 689,303 - LU632_RS03355 0.68 -0.6 689,306 + LU632_RS03355 0.69 +2.0 689,307 - LU632_RS03355 0.69 +1.3 689,307 - LU632_RS03355 0.69 +0.8
Or see this region's nucleotide sequence