Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03320

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03310 and LU632_RS03315 are separated by 172 nucleotidesLU632_RS03315 and LU632_RS03320 are separated by 181 nucleotidesLU632_RS03320 and LU632_RS03325 overlap by 4 nucleotidesLU632_RS03325 and LU632_RS03330 are separated by 3 nucleotides LU632_RS03310: LU632_RS03310 - sucrose-6-phosphate hydrolase, at 678,961 to 680,370 _RS03310 LU632_RS03315: LU632_RS03315 - MbeD family mobilization/exclusion protein, at 680,543 to 680,757 _RS03315 LU632_RS03320: LU632_RS03320 - hypothetical protein, at 680,939 to 681,630 _RS03320 LU632_RS03325: LU632_RS03325 - hypothetical protein, at 681,627 to 682,049 _RS03325 LU632_RS03330: LU632_RS03330 - LacI family DNA-binding transcriptional regulator, at 682,053 to 683,060 _RS03330 Position (kb) 680 681 682Strain fitness (log2 ratio) -2 -1 0 1 2 3at 679.957 kb on + strand, within LU632_RS03310at 679.958 kb on - strand, within LU632_RS03310at 680.010 kb on + strand, within LU632_RS03310at 680.061 kb on - strand, within LU632_RS03310at 680.086 kb on - strand, within LU632_RS03310at 680.091 kb on + strand, within LU632_RS03310at 680.092 kb on - strand, within LU632_RS03310at 680.348 kb on + strandat 680.349 kb on - strandat 680.368 kb on + strandat 680.411 kb on + strandat 680.411 kb on + strandat 680.537 kb on + strandat 680.538 kb on - strandat 680.565 kb on + strand, within LU632_RS03315at 680.565 kb on + strand, within LU632_RS03315at 680.566 kb on - strand, within LU632_RS03315at 680.566 kb on - strand, within LU632_RS03315at 680.592 kb on - strand, within LU632_RS03315at 680.597 kb on + strand, within LU632_RS03315at 680.598 kb on - strand, within LU632_RS03315at 680.598 kb on - strand, within LU632_RS03315at 680.601 kb on + strand, within LU632_RS03315at 680.602 kb on - strand, within LU632_RS03315at 680.602 kb on - strand, within LU632_RS03315at 680.668 kb on + strand, within LU632_RS03315at 680.845 kb on - strandat 680.845 kb on - strandat 680.845 kb on - strandat 680.845 kb on - strandat 680.944 kb on + strandat 681.012 kb on + strand, within LU632_RS03320at 681.108 kb on - strand, within LU632_RS03320at 681.108 kb on - strand, within LU632_RS03320at 681.119 kb on + strand, within LU632_RS03320at 681.283 kb on + strand, within LU632_RS03320at 681.283 kb on + strand, within LU632_RS03320at 681.333 kb on - strand, within LU632_RS03320at 681.333 kb on - strand, within LU632_RS03320at 681.380 kb on - strand, within LU632_RS03320at 681.428 kb on - strand, within LU632_RS03320at 681.520 kb on - strand, within LU632_RS03320at 681.594 kb on - strandat 681.594 kb on - strandat 681.615 kb on + strandat 681.615 kb on + strandat 681.616 kb on - strandat 681.658 kb on + strandat 681.659 kb on - strandat 681.659 kb on - strandat 681.659 kb on - strandat 681.675 kb on - strand, within LU632_RS03325at 681.699 kb on + strand, within LU632_RS03325at 681.700 kb on - strand, within LU632_RS03325at 681.701 kb on + strand, within LU632_RS03325at 681.701 kb on + strand, within LU632_RS03325at 681.701 kb on + strand, within LU632_RS03325at 681.702 kb on - strand, within LU632_RS03325at 681.702 kb on - strand, within LU632_RS03325at 681.702 kb on - strand, within LU632_RS03325at 681.732 kb on + strand, within LU632_RS03325at 681.732 kb on + strand, within LU632_RS03325at 681.734 kb on + strand, within LU632_RS03325at 681.734 kb on + strand, within LU632_RS03325at 681.735 kb on - strand, within LU632_RS03325at 681.735 kb on - strand, within LU632_RS03325at 681.756 kb on + strand, within LU632_RS03325at 681.757 kb on - strand, within LU632_RS03325at 681.762 kb on + strand, within LU632_RS03325at 681.763 kb on - strand, within LU632_RS03325at 681.763 kb on - strand, within LU632_RS03325at 681.763 kb on - strand, within LU632_RS03325at 681.763 kb on - strand, within LU632_RS03325at 681.778 kb on + strand, within LU632_RS03325at 681.778 kb on + strand, within LU632_RS03325at 681.779 kb on - strand, within LU632_RS03325at 681.782 kb on - strand, within LU632_RS03325at 681.782 kb on - strand, within LU632_RS03325at 681.806 kb on + strand, within LU632_RS03325at 681.806 kb on + strand, within LU632_RS03325at 681.807 kb on - strand, within LU632_RS03325at 681.807 kb on - strand, within LU632_RS03325at 681.807 kb on - strand, within LU632_RS03325at 681.893 kb on - strand, within LU632_RS03325at 681.893 kb on - strand, within LU632_RS03325at 681.893 kb on - strand, within LU632_RS03325at 681.972 kb on - strand, within LU632_RS03325at 681.977 kb on + strand, within LU632_RS03325at 681.978 kb on - strand, within LU632_RS03325at 681.986 kb on + strand, within LU632_RS03325at 681.999 kb on + strand, within LU632_RS03325at 681.999 kb on + strand, within LU632_RS03325at 682.000 kb on - strand, within LU632_RS03325at 682.005 kb on - strand, within LU632_RS03325at 682.034 kb on - strandat 682.034 kb on - strandat 682.036 kb on - strandat 682.130 kb on - strandat 682.133 kb on + strandat 682.134 kb on - strandat 682.234 kb on + strand, within LU632_RS03330at 682.290 kb on + strand, within LU632_RS03330at 682.437 kb on - strand, within LU632_RS03330at 682.454 kb on + strand, within LU632_RS03330at 682.467 kb on + strand, within LU632_RS03330at 682.501 kb on + strand, within LU632_RS03330at 682.501 kb on + strand, within LU632_RS03330at 682.502 kb on - strand, within LU632_RS03330at 682.512 kb on + strand, within LU632_RS03330at 682.514 kb on + strand, within LU632_RS03330at 682.515 kb on - strand, within LU632_RS03330at 682.524 kb on - strand, within LU632_RS03330

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA
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679,957 + LU632_RS03310 0.71 -2.1
679,958 - LU632_RS03310 0.71 -1.4
680,010 + LU632_RS03310 0.74 -0.4
680,061 - LU632_RS03310 0.78 -1.9
680,086 - LU632_RS03310 0.80 -1.4
680,091 + LU632_RS03310 0.80 +0.4
680,092 - LU632_RS03310 0.80 -0.9
680,348 + +0.0
680,349 - -1.2
680,368 + -0.4
680,411 + -1.2
680,411 + +1.4
680,537 + +1.9
680,538 - -1.4
680,565 + LU632_RS03315 0.10 -0.0
680,565 + LU632_RS03315 0.10 +1.1
680,566 - LU632_RS03315 0.11 -0.1
680,566 - LU632_RS03315 0.11 -0.2
680,592 - LU632_RS03315 0.23 -2.6
680,597 + LU632_RS03315 0.25 -0.7
680,598 - LU632_RS03315 0.26 -1.8
680,598 - LU632_RS03315 0.26 -0.4
680,601 + LU632_RS03315 0.27 +0.7
680,602 - LU632_RS03315 0.27 +0.1
680,602 - LU632_RS03315 0.27 +1.2
680,668 + LU632_RS03315 0.58 +0.2
680,845 - -0.7
680,845 - +0.9
680,845 - -1.0
680,845 - -0.0
680,944 + +1.1
681,012 + LU632_RS03320 0.11 +1.4
681,108 - LU632_RS03320 0.24 +2.0
681,108 - LU632_RS03320 0.24 +1.6
681,119 + LU632_RS03320 0.26 +3.4
681,283 + LU632_RS03320 0.50 -0.6
681,283 + LU632_RS03320 0.50 +1.5
681,333 - LU632_RS03320 0.57 +0.8
681,333 - LU632_RS03320 0.57 -1.8
681,380 - LU632_RS03320 0.64 +2.2
681,428 - LU632_RS03320 0.71 +0.4
681,520 - LU632_RS03320 0.84 -0.4
681,594 - +0.6
681,594 - +0.2
681,615 + -0.6
681,615 + +1.1
681,616 - -0.2
681,658 + +0.2
681,659 - +0.4
681,659 - +2.9
681,659 - -1.7
681,675 - LU632_RS03325 0.11 -0.9
681,699 + LU632_RS03325 0.17 -1.2
681,700 - LU632_RS03325 0.17 +0.3
681,701 + LU632_RS03325 0.17 +1.7
681,701 + LU632_RS03325 0.17 -0.8
681,701 + LU632_RS03325 0.17 -0.0
681,702 - LU632_RS03325 0.18 +1.1
681,702 - LU632_RS03325 0.18 +0.6
681,702 - LU632_RS03325 0.18 +0.9
681,732 + LU632_RS03325 0.25 -0.8
681,732 + LU632_RS03325 0.25 -0.7
681,734 + LU632_RS03325 0.25 -0.9
681,734 + LU632_RS03325 0.25 -0.6
681,735 - LU632_RS03325 0.26 +1.8
681,735 - LU632_RS03325 0.26 +1.4
681,756 + LU632_RS03325 0.30 -1.3
681,757 - LU632_RS03325 0.31 +0.7
681,762 + LU632_RS03325 0.32 +1.7
681,763 - LU632_RS03325 0.32 -1.8
681,763 - LU632_RS03325 0.32 +1.9
681,763 - LU632_RS03325 0.32 +0.0
681,763 - LU632_RS03325 0.32 +1.4
681,778 + LU632_RS03325 0.36 +0.7
681,778 + LU632_RS03325 0.36 +0.3
681,779 - LU632_RS03325 0.36 +1.0
681,782 - LU632_RS03325 0.37 +1.5
681,782 - LU632_RS03325 0.37 +1.2
681,806 + LU632_RS03325 0.42 -1.4
681,806 + LU632_RS03325 0.42 -0.4
681,807 - LU632_RS03325 0.43 +2.0
681,807 - LU632_RS03325 0.43 +1.1
681,807 - LU632_RS03325 0.43 +0.9
681,893 - LU632_RS03325 0.63 +1.7
681,893 - LU632_RS03325 0.63 +0.6
681,893 - LU632_RS03325 0.63 +2.8
681,972 - LU632_RS03325 0.82 +0.3
681,977 + LU632_RS03325 0.83 -0.7
681,978 - LU632_RS03325 0.83 +1.1
681,986 + LU632_RS03325 0.85 +1.8
681,999 + LU632_RS03325 0.88 +0.2
681,999 + LU632_RS03325 0.88 +0.4
682,000 - LU632_RS03325 0.88 +2.2
682,005 - LU632_RS03325 0.89 -0.6
682,034 - +1.5
682,034 - +0.5
682,036 - +0.1
682,130 - +1.4
682,133 + +1.0
682,134 - +1.6
682,234 + LU632_RS03330 0.18 +3.0
682,290 + LU632_RS03330 0.24 +2.4
682,437 - LU632_RS03330 0.38 +0.8
682,454 + LU632_RS03330 0.40 +1.3
682,467 + LU632_RS03330 0.41 +1.4
682,501 + LU632_RS03330 0.44 +1.3
682,501 + LU632_RS03330 0.44 +1.6
682,502 - LU632_RS03330 0.45 +1.4
682,512 + LU632_RS03330 0.46 +1.6
682,514 + LU632_RS03330 0.46 +1.5
682,515 - LU632_RS03330 0.46 +1.9
682,524 - LU632_RS03330 0.47 -0.2

Or see this region's nucleotide sequence