Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gspE and ppdD overlap by 1 nucleotides ppdD and nadC are separated by 195 nucleotides
LU632_RS03030: gspE - type II secretion system protein GspE, at 619,058 to 620,461
gspE
LU632_RS03035: ppdD - prepilin peptidase-dependent pilin, at 620,461 to 620,913
ppdD
LU632_RS03040: nadC - carboxylating nicotinate-nucleotide diphosphorylase, at 621,109 to 621,996
nadC
Position (kb) 620
621 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 619.504 kb on + strand, within gspE at 619.505 kb on - strand, within gspE at 619.508 kb on + strand, within gspE at 619.513 kb on + strand, within gspE at 619.513 kb on + strand, within gspE at 619.591 kb on + strand, within gspE at 619.591 kb on + strand, within gspE at 619.592 kb on - strand, within gspE at 619.595 kb on - strand, within gspE at 619.661 kb on + strand, within gspE at 619.662 kb on - strand, within gspE at 619.662 kb on - strand, within gspE at 619.714 kb on + strand, within gspE at 619.743 kb on + strand, within gspE at 619.744 kb on - strand, within gspE at 619.744 kb on - strand, within gspE at 619.744 kb on - strand, within gspE at 619.758 kb on + strand, within gspE at 619.903 kb on + strand, within gspE at 619.903 kb on + strand, within gspE at 620.008 kb on + strand, within gspE at 620.009 kb on - strand, within gspE at 620.102 kb on + strand, within gspE at 620.103 kb on - strand, within gspE at 620.105 kb on - strand, within gspE at 620.105 kb on - strand, within gspE at 620.105 kb on - strand, within gspE at 620.134 kb on + strand, within gspE at 620.159 kb on - strand, within gspE at 620.159 kb on - strand, within gspE at 620.189 kb on + strand, within gspE at 620.218 kb on + strand, within gspE at 620.295 kb on + strand, within gspE at 620.305 kb on + strand, within gspE at 620.314 kb on + strand, within gspE at 620.315 kb on - strand, within gspE at 620.324 kb on - strand at 620.342 kb on + strand at 620.342 kb on + strand at 620.343 kb on - strand at 620.392 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.429 kb on - strand at 620.559 kb on + strand, within ppdD at 620.559 kb on + strand, within ppdD at 620.560 kb on - strand, within ppdD at 620.672 kb on + strand, within ppdD at 620.673 kb on - strand, within ppdD at 620.756 kb on - strand, within ppdD at 620.767 kb on - strand, within ppdD at 620.816 kb on + strand, within ppdD at 620.817 kb on - strand, within ppdD at 620.892 kb on + strand at 620.893 kb on - strand at 620.918 kb on + strand at 620.919 kb on - strand at 621.032 kb on - strand at 621.032 kb on - strand at 621.032 kb on - strand at 621.032 kb on - strand at 621.127 kb on + strand at 621.144 kb on + strand at 621.194 kb on + strand at 621.342 kb on + strand, within nadC at 621.343 kb on - strand, within nadC at 621.455 kb on + strand, within nadC at 621.506 kb on + strand, within nadC at 621.507 kb on - strand, within nadC at 621.541 kb on - strand, within nadC at 621.541 kb on - strand, within nadC at 621.587 kb on + strand, within nadC at 621.588 kb on - strand, within nadC at 621.588 kb on - strand, within nadC at 621.588 kb on - strand, within nadC at 621.588 kb on - strand, within nadC at 621.588 kb on - strand, within nadC at 621.654 kb on + strand, within nadC at 621.817 kb on + strand, within nadC at 621.817 kb on + strand, within nadC at 621.850 kb on + strand, within nadC at 621.850 kb on + strand, within nadC at 621.850 kb on + strand, within nadC at 621.851 kb on - strand, within nadC
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 619,504 + gspE LU632_RS03030 0.32 +0.2 619,505 - gspE LU632_RS03030 0.32 -0.1 619,508 + gspE LU632_RS03030 0.32 +0.6 619,513 + gspE LU632_RS03030 0.32 +0.2 619,513 + gspE LU632_RS03030 0.32 -0.2 619,591 + gspE LU632_RS03030 0.38 -2.6 619,591 + gspE LU632_RS03030 0.38 -1.1 619,592 - gspE LU632_RS03030 0.38 -0.4 619,595 - gspE LU632_RS03030 0.38 -0.1 619,661 + gspE LU632_RS03030 0.43 -0.7 619,662 - gspE LU632_RS03030 0.43 -0.2 619,662 - gspE LU632_RS03030 0.43 +1.2 619,714 + gspE LU632_RS03030 0.47 -1.6 619,743 + gspE LU632_RS03030 0.49 +0.1 619,744 - gspE LU632_RS03030 0.49 +1.0 619,744 - gspE LU632_RS03030 0.49 -0.1 619,744 - gspE LU632_RS03030 0.49 +2.4 619,758 + gspE LU632_RS03030 0.50 +2.2 619,903 + gspE LU632_RS03030 0.60 +0.4 619,903 + gspE LU632_RS03030 0.60 -0.9 620,008 + gspE LU632_RS03030 0.68 +0.4 620,009 - gspE LU632_RS03030 0.68 +0.8 620,102 + gspE LU632_RS03030 0.74 -0.1 620,103 - gspE LU632_RS03030 0.74 +0.0 620,105 - gspE LU632_RS03030 0.75 +1.4 620,105 - gspE LU632_RS03030 0.75 +0.6 620,105 - gspE LU632_RS03030 0.75 -0.1 620,134 + gspE LU632_RS03030 0.77 -0.2 620,159 - gspE LU632_RS03030 0.78 -0.7 620,159 - gspE LU632_RS03030 0.78 +0.7 620,189 + gspE LU632_RS03030 0.81 -2.7 620,218 + gspE LU632_RS03030 0.83 -0.0 620,295 + gspE LU632_RS03030 0.88 +0.4 620,305 + gspE LU632_RS03030 0.89 +1.2 620,314 + gspE LU632_RS03030 0.89 +0.2 620,315 - gspE LU632_RS03030 0.90 -0.6 620,324 - +1.9 620,342 + +1.9 620,342 + -2.1 620,343 - -2.7 620,392 + -0.6 620,428 + -0.2 620,428 + +5.5 620,429 - +0.6 620,559 + ppdD LU632_RS03035 0.22 -0.4 620,559 + ppdD LU632_RS03035 0.22 -2.0 620,560 - ppdD LU632_RS03035 0.22 -0.4 620,672 + ppdD LU632_RS03035 0.47 +1.1 620,673 - ppdD LU632_RS03035 0.47 +0.5 620,756 - ppdD LU632_RS03035 0.65 +0.4 620,767 - ppdD LU632_RS03035 0.68 -0.6 620,816 + ppdD LU632_RS03035 0.78 -1.2 620,817 - ppdD LU632_RS03035 0.79 -1.1 620,892 + +1.1 620,893 - -0.0 620,918 + -0.6 620,919 - +0.4 621,032 - -0.2 621,032 - +0.3 621,032 - -0.1 621,032 - -0.4 621,127 + +0.2 621,144 + -0.2 621,194 + -1.6 621,342 + nadC LU632_RS03040 0.26 -1.6 621,343 - nadC LU632_RS03040 0.26 +0.6 621,455 + nadC LU632_RS03040 0.39 -0.2 621,506 + nadC LU632_RS03040 0.45 -1.3 621,507 - nadC LU632_RS03040 0.45 -1.1 621,541 - nadC LU632_RS03040 0.49 -0.9 621,541 - nadC LU632_RS03040 0.49 -0.9 621,587 + nadC LU632_RS03040 0.54 -2.0 621,588 - nadC LU632_RS03040 0.54 -0.6 621,588 - nadC LU632_RS03040 0.54 -1.9 621,588 - nadC LU632_RS03040 0.54 +0.9 621,588 - nadC LU632_RS03040 0.54 +1.7 621,588 - nadC LU632_RS03040 0.54 +0.2 621,654 + nadC LU632_RS03040 0.61 +2.0 621,817 + nadC LU632_RS03040 0.80 -0.9 621,817 + nadC LU632_RS03040 0.80 +0.3 621,850 + nadC LU632_RS03040 0.83 +0.1 621,850 + nadC LU632_RS03040 0.83 +0.9 621,850 + nadC LU632_RS03040 0.83 +0.4 621,851 - nadC LU632_RS03040 0.84 -0.1
Or see this region's nucleotide sequence