Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03020 and hofC are separated by 50 nucleotides hofC and gspE overlap by 23 nucleotides
LU632_RS03020: LU632_RS03020 - GMP reductase, at 616,790 to 617,830
_RS03020
LU632_RS03025: hofC - protein transport protein HofC, at 617,881 to 619,080
hofC
LU632_RS03030: gspE - type II secretion system protein GspE, at 619,058 to 620,461
gspE
Position (kb) 617
618
619
620 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 616.936 kb on + strand, within LU632_RS03020 at 616.948 kb on + strand, within LU632_RS03020 at 616.969 kb on + strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 617.025 kb on - strand, within LU632_RS03020 at 617.025 kb on - strand, within LU632_RS03020 at 617.025 kb on - strand, within LU632_RS03020 at 617.073 kb on + strand, within LU632_RS03020 at 617.095 kb on + strand, within LU632_RS03020 at 617.123 kb on - strand, within LU632_RS03020 at 617.128 kb on - strand, within LU632_RS03020 at 617.178 kb on + strand, within LU632_RS03020 at 617.179 kb on - strand, within LU632_RS03020 at 617.260 kb on + strand, within LU632_RS03020 at 617.311 kb on + strand, within LU632_RS03020 at 617.312 kb on - strand, within LU632_RS03020 at 617.370 kb on + strand, within LU632_RS03020 at 617.397 kb on + strand, within LU632_RS03020 at 617.471 kb on - strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.473 kb on - strand, within LU632_RS03020 at 617.473 kb on - strand, within LU632_RS03020 at 617.473 kb on - strand, within LU632_RS03020 at 617.518 kb on + strand, within LU632_RS03020 at 617.519 kb on - strand, within LU632_RS03020 at 617.578 kb on + strand, within LU632_RS03020 at 617.578 kb on + strand, within LU632_RS03020 at 617.642 kb on + strand, within LU632_RS03020 at 617.692 kb on - strand, within LU632_RS03020 at 617.696 kb on - strand, within LU632_RS03020 at 617.710 kb on + strand, within LU632_RS03020 at 617.737 kb on + strand at 617.741 kb on + strand at 617.742 kb on - strand at 617.742 kb on - strand at 617.868 kb on + strand at 617.869 kb on - strand at 617.869 kb on - strand at 617.869 kb on - strand at 617.918 kb on + strand at 617.956 kb on + strand at 617.995 kb on - strand at 618.048 kb on + strand, within hofC at 618.048 kb on + strand, within hofC at 618.048 kb on + strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.092 kb on + strand, within hofC at 618.132 kb on + strand, within hofC at 618.132 kb on + strand, within hofC at 618.133 kb on - strand, within hofC at 618.135 kb on - strand, within hofC at 618.135 kb on - strand, within hofC at 618.135 kb on - strand, within hofC at 618.136 kb on + strand, within hofC at 618.136 kb on + strand, within hofC at 618.137 kb on - strand, within hofC at 618.156 kb on + strand, within hofC at 618.157 kb on - strand, within hofC at 618.223 kb on + strand, within hofC at 618.228 kb on + strand, within hofC at 618.274 kb on - strand, within hofC at 618.274 kb on - strand, within hofC at 618.274 kb on - strand, within hofC at 618.277 kb on + strand, within hofC at 618.278 kb on - strand, within hofC at 618.278 kb on - strand, within hofC at 618.348 kb on + strand, within hofC at 618.395 kb on + strand, within hofC at 618.406 kb on + strand, within hofC at 618.406 kb on + strand, within hofC at 618.407 kb on - strand, within hofC at 618.460 kb on + strand, within hofC at 618.460 kb on + strand, within hofC at 618.503 kb on + strand, within hofC at 618.503 kb on + strand, within hofC at 618.503 kb on + strand, within hofC at 618.505 kb on + strand, within hofC at 618.506 kb on - strand, within hofC at 618.527 kb on - strand, within hofC at 618.613 kb on + strand, within hofC at 618.666 kb on + strand, within hofC at 618.769 kb on - strand, within hofC at 618.864 kb on + strand, within hofC at 618.869 kb on - strand, within hofC at 618.920 kb on - strand, within hofC at 618.974 kb on - strand at 619.103 kb on + strand at 619.120 kb on + strand at 619.158 kb on - strand at 619.188 kb on - strand at 619.193 kb on + strand at 619.194 kb on - strand at 619.194 kb on - strand at 619.282 kb on - strand, within gspE at 619.504 kb on + strand, within gspE at 619.505 kb on - strand, within gspE at 619.508 kb on + strand, within gspE at 619.513 kb on + strand, within gspE at 619.513 kb on + strand, within gspE at 619.591 kb on + strand, within gspE at 619.591 kb on + strand, within gspE at 619.592 kb on - strand, within gspE at 619.595 kb on - strand, within gspE at 619.661 kb on + strand, within gspE at 619.662 kb on - strand, within gspE at 619.662 kb on - strand, within gspE at 619.714 kb on + strand, within gspE at 619.743 kb on + strand, within gspE at 619.744 kb on - strand, within gspE at 619.744 kb on - strand, within gspE at 619.744 kb on - strand, within gspE at 619.758 kb on + strand, within gspE at 619.903 kb on + strand, within gspE at 619.903 kb on + strand, within gspE at 620.008 kb on + strand, within gspE at 620.009 kb on - strand, within gspE
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 616,936 + LU632_RS03020 0.14 +1.2 616,948 + LU632_RS03020 0.15 -0.3 616,969 + LU632_RS03020 0.17 -0.2 616,970 - LU632_RS03020 0.17 -0.7 616,970 - LU632_RS03020 0.17 +1.9 616,970 - LU632_RS03020 0.17 +1.9 616,970 - LU632_RS03020 0.17 +2.4 617,025 - LU632_RS03020 0.23 -2.1 617,025 - LU632_RS03020 0.23 -0.9 617,025 - LU632_RS03020 0.23 -0.1 617,073 + LU632_RS03020 0.27 -0.4 617,095 + LU632_RS03020 0.29 +2.2 617,123 - LU632_RS03020 0.32 +1.9 617,128 - LU632_RS03020 0.32 -0.3 617,178 + LU632_RS03020 0.37 -1.4 617,179 - LU632_RS03020 0.37 -1.7 617,260 + LU632_RS03020 0.45 -1.0 617,311 + LU632_RS03020 0.50 +0.0 617,312 - LU632_RS03020 0.50 +1.3 617,370 + LU632_RS03020 0.56 +0.3 617,397 + LU632_RS03020 0.58 -0.6 617,471 - LU632_RS03020 0.65 -0.5 617,472 + LU632_RS03020 0.66 +2.0 617,472 + LU632_RS03020 0.66 -0.3 617,472 + LU632_RS03020 0.66 -0.6 617,472 + LU632_RS03020 0.66 +2.2 617,473 - LU632_RS03020 0.66 +0.4 617,473 - LU632_RS03020 0.66 +0.3 617,473 - LU632_RS03020 0.66 -0.1 617,518 + LU632_RS03020 0.70 -0.4 617,519 - LU632_RS03020 0.70 -2.8 617,578 + LU632_RS03020 0.76 +1.2 617,578 + LU632_RS03020 0.76 +0.4 617,642 + LU632_RS03020 0.82 -0.6 617,692 - LU632_RS03020 0.87 -0.1 617,696 - LU632_RS03020 0.87 +3.2 617,710 + LU632_RS03020 0.88 -1.1 617,737 + +0.1 617,741 + -0.5 617,742 - -0.9 617,742 - -0.3 617,868 + +3.0 617,869 - -0.1 617,869 - +0.3 617,869 - -2.4 617,918 + -0.4 617,956 + +0.6 617,995 - -0.8 618,048 + hofC LU632_RS03025 0.14 -4.0 618,048 + hofC LU632_RS03025 0.14 -1.0 618,048 + hofC LU632_RS03025 0.14 +0.2 618,049 - hofC LU632_RS03025 0.14 +1.5 618,049 - hofC LU632_RS03025 0.14 +0.2 618,049 - hofC LU632_RS03025 0.14 +0.0 618,049 - hofC LU632_RS03025 0.14 -2.7 618,049 - hofC LU632_RS03025 0.14 -0.8 618,092 + hofC LU632_RS03025 0.18 -0.7 618,132 + hofC LU632_RS03025 0.21 -1.6 618,132 + hofC LU632_RS03025 0.21 +0.4 618,133 - hofC LU632_RS03025 0.21 -0.1 618,135 - hofC LU632_RS03025 0.21 +0.4 618,135 - hofC LU632_RS03025 0.21 -0.9 618,135 - hofC LU632_RS03025 0.21 -2.3 618,136 + hofC LU632_RS03025 0.21 +0.8 618,136 + hofC LU632_RS03025 0.21 +0.2 618,137 - hofC LU632_RS03025 0.21 -1.4 618,156 + hofC LU632_RS03025 0.23 +0.9 618,157 - hofC LU632_RS03025 0.23 -1.9 618,223 + hofC LU632_RS03025 0.28 -0.9 618,228 + hofC LU632_RS03025 0.29 -0.3 618,274 - hofC LU632_RS03025 0.33 +0.1 618,274 - hofC LU632_RS03025 0.33 +0.6 618,274 - hofC LU632_RS03025 0.33 +0.0 618,277 + hofC LU632_RS03025 0.33 -1.1 618,278 - hofC LU632_RS03025 0.33 +0.7 618,278 - hofC LU632_RS03025 0.33 +0.9 618,348 + hofC LU632_RS03025 0.39 -0.7 618,395 + hofC LU632_RS03025 0.43 -1.4 618,406 + hofC LU632_RS03025 0.44 -0.6 618,406 + hofC LU632_RS03025 0.44 -0.3 618,407 - hofC LU632_RS03025 0.44 -0.3 618,460 + hofC LU632_RS03025 0.48 -0.4 618,460 + hofC LU632_RS03025 0.48 -1.1 618,503 + hofC LU632_RS03025 0.52 -2.8 618,503 + hofC LU632_RS03025 0.52 +2.0 618,503 + hofC LU632_RS03025 0.52 -1.9 618,505 + hofC LU632_RS03025 0.52 +0.2 618,506 - hofC LU632_RS03025 0.52 +0.4 618,527 - hofC LU632_RS03025 0.54 -0.3 618,613 + hofC LU632_RS03025 0.61 +1.4 618,666 + hofC LU632_RS03025 0.65 -2.4 618,769 - hofC LU632_RS03025 0.74 -0.2 618,864 + hofC LU632_RS03025 0.82 -0.6 618,869 - hofC LU632_RS03025 0.82 -0.8 618,920 - hofC LU632_RS03025 0.87 -0.1 618,974 - -0.2 619,103 + +0.2 619,120 + -0.3 619,158 - +0.6 619,188 - +2.4 619,193 + -1.4 619,194 - +1.2 619,194 - -0.6 619,282 - gspE LU632_RS03030 0.16 +1.4 619,504 + gspE LU632_RS03030 0.32 +0.2 619,505 - gspE LU632_RS03030 0.32 -0.1 619,508 + gspE LU632_RS03030 0.32 +0.6 619,513 + gspE LU632_RS03030 0.32 +0.2 619,513 + gspE LU632_RS03030 0.32 -0.2 619,591 + gspE LU632_RS03030 0.38 -2.6 619,591 + gspE LU632_RS03030 0.38 -1.1 619,592 - gspE LU632_RS03030 0.38 -0.4 619,595 - gspE LU632_RS03030 0.38 -0.1 619,661 + gspE LU632_RS03030 0.43 -0.7 619,662 - gspE LU632_RS03030 0.43 -0.2 619,662 - gspE LU632_RS03030 0.43 +1.2 619,714 + gspE LU632_RS03030 0.47 -1.6 619,743 + gspE LU632_RS03030 0.49 +0.1 619,744 - gspE LU632_RS03030 0.49 +1.0 619,744 - gspE LU632_RS03030 0.49 -0.1 619,744 - gspE LU632_RS03030 0.49 +2.4 619,758 + gspE LU632_RS03030 0.50 +2.2 619,903 + gspE LU632_RS03030 0.60 +0.4 619,903 + gspE LU632_RS03030 0.60 -0.9 620,008 + gspE LU632_RS03030 0.68 +0.4 620,009 - gspE LU632_RS03030 0.68 +0.8
Or see this region's nucleotide sequence