Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02725

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Cucumber; plant sample=CP3; plant location=NA
549,649	-	pdxA	LU632_RS02725	0.68	+1.5
549,829	+	pdxA	LU632_RS02725	0.86	+0.5
549,934	+				-0.1
549,962	+				+0.5
550,033	+				+2.0
550,034	-				-0.1
550,036	-				-0.9
550,144	-	rsmA	LU632_RS02730	0.22	-1.5
550,261	+	rsmA	LU632_RS02730	0.36	+0.5
550,309	+	rsmA	LU632_RS02730	0.42	+0.5
550,310	-	rsmA	LU632_RS02730	0.42	-0.5
550,311	+	rsmA	LU632_RS02730	0.42	-0.5
550,349	-	rsmA	LU632_RS02730	0.46	-2.2
550,351	-	rsmA	LU632_RS02730	0.47	+3.4
550,459	+	rsmA	LU632_RS02730	0.60	+1.5
550,538	+	rsmA	LU632_RS02730	0.69	-0.1
550,629	+	rsmA	LU632_RS02730	0.80	-0.5
550,835	-	apaG	LU632_RS02735	0.10	-2.0
550,874	+	apaG	LU632_RS02735	0.21	-1.9
550,888	+	apaG	LU632_RS02735	0.24	-0.7
550,888	+	apaG	LU632_RS02735	0.24	+1.4
550,929	+	apaG	LU632_RS02735	0.35	+0.1