Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tal and mog are separated by 111 nucleotides mog and LU632_RS02640 are separated by 226 nucleotides LU632_RS02640 and LU632_RS02645 are separated by 79 nucleotides
LU632_RS02630: tal - transaldolase, at 525,952 to 526,905
tal
LU632_RS02635: mog - molybdopterin adenylyltransferase, at 527,017 to 527,601
mog
LU632_RS02640: LU632_RS02640 - MFS transporter, at 527,828 to 529,147
_RS02640
LU632_RS02645: LU632_RS02645 - IS1 family transposase, at 529,227 to 529,924
_RS02645
Position (kb) 527
528
529
530 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 526.907 kb on + strand at 526.911 kb on - strand at 526.937 kb on + strand at 526.937 kb on + strand at 526.938 kb on - strand at 526.958 kb on + strand at 526.963 kb on + strand at 526.968 kb on - strand at 526.969 kb on - strand at 527.027 kb on + strand at 527.028 kb on - strand at 527.033 kb on + strand at 527.034 kb on - strand at 527.075 kb on - strand at 527.470 kb on - strand, within mog at 527.502 kb on - strand, within mog at 527.502 kb on - strand, within mog at 527.502 kb on - strand, within mog at 527.538 kb on - strand, within mog at 527.595 kb on - strand at 527.615 kb on + strand at 527.616 kb on - strand at 527.621 kb on + strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.729 kb on + strand at 527.749 kb on - strand at 527.767 kb on + strand at 527.785 kb on + strand at 527.827 kb on + strand at 527.827 kb on + strand at 527.828 kb on - strand at 527.869 kb on + strand at 527.998 kb on - strand, within LU632_RS02640 at 527.998 kb on - strand, within LU632_RS02640 at 527.998 kb on - strand, within LU632_RS02640 at 528.026 kb on + strand, within LU632_RS02640 at 528.076 kb on + strand, within LU632_RS02640 at 528.108 kb on + strand, within LU632_RS02640 at 528.108 kb on + strand, within LU632_RS02640 at 528.202 kb on + strand, within LU632_RS02640 at 528.203 kb on - strand, within LU632_RS02640 at 528.281 kb on - strand, within LU632_RS02640 at 528.547 kb on + strand, within LU632_RS02640 at 528.568 kb on + strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.680 kb on - strand, within LU632_RS02640 at 528.699 kb on + strand, within LU632_RS02640 at 528.761 kb on - strand, within LU632_RS02640 at 528.804 kb on - strand, within LU632_RS02640 at 528.891 kb on - strand, within LU632_RS02640 at 528.947 kb on + strand, within LU632_RS02640 at 528.947 kb on + strand, within LU632_RS02640 at 528.948 kb on - strand, within LU632_RS02640 at 528.948 kb on - strand, within LU632_RS02640 at 528.948 kb on - strand, within LU632_RS02640 at 528.949 kb on + strand, within LU632_RS02640 at 528.960 kb on - strand, within LU632_RS02640 at 528.989 kb on - strand, within LU632_RS02640 at 529.034 kb on + strand at 529.034 kb on + strand at 529.034 kb on + strand at 529.034 kb on + strand at 529.034 kb on + strand at 529.035 kb on - strand at 529.035 kb on - strand at 529.035 kb on - strand at 529.035 kb on - strand at 529.038 kb on + strand at 529.039 kb on - strand at 529.076 kb on + strand at 529.076 kb on + strand at 529.076 kb on + strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.077 kb on - strand at 529.093 kb on + strand at 529.158 kb on - strand at 529.202 kb on - strand at 529.202 kb on - strand at 529.943 kb on + strand at 529.956 kb on + strand at 529.999 kb on + strand at 530.065 kb on - strand at 530.081 kb on + strand at 530.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 526,907 + -0.5 526,911 - -0.5 526,937 + -0.1 526,937 + +0.6 526,938 - +1.0 526,958 + -0.6 526,963 + -0.8 526,968 - -0.1 526,969 - -0.5 527,027 + -1.1 527,028 - -0.9 527,033 + +0.2 527,034 - -0.3 527,075 - -0.4 527,470 - mog LU632_RS02635 0.77 -0.7 527,502 - mog LU632_RS02635 0.83 -0.1 527,502 - mog LU632_RS02635 0.83 -1.9 527,502 - mog LU632_RS02635 0.83 -1.3 527,538 - mog LU632_RS02635 0.89 -1.0 527,595 - -1.5 527,615 + +0.5 527,616 - +0.4 527,621 + +0.1 527,622 - -0.2 527,622 - -1.0 527,729 + +0.7 527,749 - +0.7 527,767 + -0.1 527,785 + -1.2 527,827 + +0.7 527,827 + +0.5 527,828 - -0.3 527,869 + -1.0 527,998 - LU632_RS02640 0.13 +0.5 527,998 - LU632_RS02640 0.13 +1.2 527,998 - LU632_RS02640 0.13 +0.2 528,026 + LU632_RS02640 0.15 -1.3 528,076 + LU632_RS02640 0.19 -0.1 528,108 + LU632_RS02640 0.21 -0.4 528,108 + LU632_RS02640 0.21 -1.1 528,202 + LU632_RS02640 0.28 -1.5 528,203 - LU632_RS02640 0.28 +0.4 528,281 - LU632_RS02640 0.34 +1.5 528,547 + LU632_RS02640 0.54 -0.9 528,568 + LU632_RS02640 0.56 -0.4 528,680 - LU632_RS02640 0.65 +0.0 528,680 - LU632_RS02640 0.65 +1.9 528,680 - LU632_RS02640 0.65 -0.5 528,680 - LU632_RS02640 0.65 -1.7 528,699 + LU632_RS02640 0.66 +1.1 528,761 - LU632_RS02640 0.71 -0.4 528,804 - LU632_RS02640 0.74 -0.1 528,891 - LU632_RS02640 0.81 +1.0 528,947 + LU632_RS02640 0.85 +0.2 528,947 + LU632_RS02640 0.85 +1.1 528,948 - LU632_RS02640 0.85 -0.0 528,948 - LU632_RS02640 0.85 +0.2 528,948 - LU632_RS02640 0.85 -0.5 528,949 + LU632_RS02640 0.85 -0.7 528,960 - LU632_RS02640 0.86 +0.5 528,989 - LU632_RS02640 0.88 -1.5 529,034 + -0.4 529,034 + -0.4 529,034 + +1.7 529,034 + +1.1 529,034 + -0.2 529,035 - +3.7 529,035 - -0.5 529,035 - -0.2 529,035 - +0.5 529,038 + +1.1 529,039 - +0.5 529,076 + +1.9 529,076 + -2.2 529,076 + -1.1 529,077 - +0.4 529,077 - +0.1 529,077 - +0.7 529,077 - +0.9 529,077 - -1.6 529,077 - -0.1 529,077 - -0.3 529,077 - +0.1 529,093 + +2.5 529,158 - +1.1 529,202 - +0.2 529,202 - +1.0 529,943 + +1.2 529,956 + -0.9 529,999 + +1.6 530,065 - -0.7 530,081 + +0.3 530,117 + +1.7
Or see this region's nucleotide sequence