Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02500 and LU632_RS02505 are separated by 185 nucleotides LU632_RS02505 and LU632_RS02510 overlap by 4 nucleotides
LU632_RS02500: LU632_RS02500 - DDE-type integrase/transposase/recombinase, at 496,572 to 497,194
_RS02500
LU632_RS02505: LU632_RS02505 - DUF6363 domain-containing protein, at 497,380 to 498,342
_RS02505
LU632_RS02510: LU632_RS02510 - TatD family hydrolase, at 498,339 to 499,115
_RS02510
Position (kb) 497
498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 496.433 kb on + strand at 496.434 kb on - strand at 496.434 kb on - strand at 496.435 kb on + strand at 496.435 kb on + strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.511 kb on + strand at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.709 kb on - strand, within LU632_RS02500 at 496.979 kb on - strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.053 kb on - strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.085 kb on + strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.160 kb on + strand at 497.160 kb on + strand at 497.160 kb on + strand at 497.160 kb on + strand at 497.161 kb on - strand at 497.177 kb on + strand at 497.191 kb on + strand at 497.222 kb on + strand at 497.223 kb on - strand at 497.253 kb on - strand at 497.299 kb on + strand at 497.299 kb on + strand at 497.299 kb on + strand at 497.300 kb on - strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.389 kb on + strand at 497.390 kb on - strand at 497.391 kb on + strand at 497.392 kb on - strand at 497.587 kb on + strand, within LU632_RS02505 at 497.589 kb on + strand, within LU632_RS02505 at 497.589 kb on + strand, within LU632_RS02505 at 497.607 kb on + strand, within LU632_RS02505 at 497.609 kb on + strand, within LU632_RS02505 at 497.610 kb on - strand, within LU632_RS02505 at 497.610 kb on - strand, within LU632_RS02505 at 497.610 kb on - strand, within LU632_RS02505 at 497.740 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.806 kb on + strand, within LU632_RS02505 at 497.807 kb on - strand, within LU632_RS02505 at 497.807 kb on - strand, within LU632_RS02505 at 498.009 kb on + strand, within LU632_RS02505 at 498.010 kb on - strand, within LU632_RS02505 at 498.034 kb on + strand, within LU632_RS02505 at 498.035 kb on - strand, within LU632_RS02505 at 498.035 kb on - strand, within LU632_RS02505 at 498.055 kb on - strand, within LU632_RS02505 at 498.118 kb on - strand, within LU632_RS02505 at 498.118 kb on - strand, within LU632_RS02505 at 498.118 kb on - strand, within LU632_RS02505 at 498.158 kb on - strand, within LU632_RS02505 at 498.281 kb on + strand at 498.282 kb on - strand at 498.282 kb on - strand at 498.320 kb on - strand at 498.516 kb on + strand, within LU632_RS02510 at 498.555 kb on + strand, within LU632_RS02510 at 498.588 kb on + strand, within LU632_RS02510 at 498.588 kb on + strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.590 kb on + strand, within LU632_RS02510 at 498.591 kb on - strand, within LU632_RS02510 at 498.721 kb on + strand, within LU632_RS02510 at 498.722 kb on - strand, within LU632_RS02510 at 498.722 kb on - strand, within LU632_RS02510 at 498.889 kb on - strand, within LU632_RS02510 at 499.092 kb on - strand at 499.109 kb on + strand at 499.110 kb on - strand at 499.209 kb on + strand at 499.209 kb on + strand at 499.210 kb on - strand at 499.214 kb on + strand at 499.214 kb on + strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.306 kb on + strand at 499.307 kb on - strand at 499.307 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 496,433 + -1.9 496,434 - -0.2 496,434 - +0.5 496,435 + +1.5 496,435 + -0.1 496,436 - -3.2 496,436 - -0.9 496,436 - -0.4 496,436 - +0.1 496,511 + -0.5 496,689 + LU632_RS02500 0.19 +1.2 496,689 + LU632_RS02500 0.19 -0.5 496,689 + LU632_RS02500 0.19 +0.1 496,689 + LU632_RS02500 0.19 +0.3 496,689 + LU632_RS02500 0.19 +0.5 496,690 - LU632_RS02500 0.19 -0.1 496,690 - LU632_RS02500 0.19 -0.2 496,690 - LU632_RS02500 0.19 +1.5 496,690 - LU632_RS02500 0.19 +0.8 496,690 - LU632_RS02500 0.19 +0.2 496,709 - LU632_RS02500 0.22 -1.8 496,979 - LU632_RS02500 0.65 -0.8 497,052 + LU632_RS02500 0.77 -0.1 497,052 + LU632_RS02500 0.77 +0.8 497,052 + LU632_RS02500 0.77 +0.2 497,053 - LU632_RS02500 0.77 -0.6 497,083 + LU632_RS02500 0.82 -0.3 497,083 + LU632_RS02500 0.82 -2.0 497,083 + LU632_RS02500 0.82 +1.5 497,084 - LU632_RS02500 0.82 -1.1 497,084 - LU632_RS02500 0.82 -0.4 497,084 - LU632_RS02500 0.82 -0.7 497,085 + LU632_RS02500 0.82 -0.5 497,086 - LU632_RS02500 0.83 -2.0 497,086 - LU632_RS02500 0.83 -1.8 497,086 - LU632_RS02500 0.83 -0.0 497,160 + -0.8 497,160 + +0.6 497,160 + +0.9 497,160 + -0.5 497,161 - +0.9 497,177 + -2.0 497,191 + +1.5 497,222 + -0.9 497,223 - -0.4 497,253 - -0.3 497,299 + -0.1 497,299 + +1.3 497,299 + +1.5 497,300 - -0.3 497,389 + -1.1 497,389 + -0.2 497,389 + -0.5 497,389 + +2.1 497,389 + +0.4 497,389 + +1.5 497,390 - -0.3 497,391 + -1.9 497,392 - -0.4 497,587 + LU632_RS02505 0.21 +0.1 497,589 + LU632_RS02505 0.22 +0.6 497,589 + LU632_RS02505 0.22 -0.9 497,607 + LU632_RS02505 0.24 +0.9 497,609 + LU632_RS02505 0.24 -0.5 497,610 - LU632_RS02505 0.24 -0.1 497,610 - LU632_RS02505 0.24 -1.3 497,610 - LU632_RS02505 0.24 +0.1 497,740 + LU632_RS02505 0.37 +2.7 497,806 + LU632_RS02505 0.44 +0.4 497,806 + LU632_RS02505 0.44 -1.3 497,806 + LU632_RS02505 0.44 -1.2 497,806 + LU632_RS02505 0.44 -0.5 497,806 + LU632_RS02505 0.44 +0.6 497,807 - LU632_RS02505 0.44 -1.3 497,807 - LU632_RS02505 0.44 -0.4 498,009 + LU632_RS02505 0.65 +0.1 498,010 - LU632_RS02505 0.65 -0.1 498,034 + LU632_RS02505 0.68 +0.3 498,035 - LU632_RS02505 0.68 +0.8 498,035 - LU632_RS02505 0.68 -0.5 498,055 - LU632_RS02505 0.70 -1.6 498,118 - LU632_RS02505 0.77 -1.4 498,118 - LU632_RS02505 0.77 -1.5 498,118 - LU632_RS02505 0.77 +0.0 498,158 - LU632_RS02505 0.81 +1.0 498,281 + +4.1 498,282 - -0.2 498,282 - +0.2 498,320 - +0.9 498,516 + LU632_RS02510 0.23 +0.9 498,555 + LU632_RS02510 0.28 -0.8 498,588 + LU632_RS02510 0.32 +0.9 498,588 + LU632_RS02510 0.32 +0.8 498,589 - LU632_RS02510 0.32 -1.7 498,589 - LU632_RS02510 0.32 +1.1 498,589 - LU632_RS02510 0.32 -1.8 498,589 - LU632_RS02510 0.32 -0.5 498,589 - LU632_RS02510 0.32 +1.1 498,590 + LU632_RS02510 0.32 -0.3 498,591 - LU632_RS02510 0.32 +2.1 498,721 + LU632_RS02510 0.49 +1.8 498,722 - LU632_RS02510 0.49 +0.2 498,722 - LU632_RS02510 0.49 +0.4 498,889 - LU632_RS02510 0.71 -0.2 499,092 - -0.5 499,109 + -1.4 499,110 - +0.3 499,209 + -0.3 499,209 + -0.3 499,210 - -1.1 499,214 + -0.4 499,214 + +0.6 499,215 - -1.1 499,215 - -1.3 499,215 - -1.5 499,306 + +0.9 499,307 - -0.4 499,307 - +0.3
Or see this region's nucleotide sequence