Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02455 and LU632_RS02460 overlap by 19 nucleotides LU632_RS02460 and LU632_RS02465 are separated by 276 nucleotides LU632_RS02465 and LU632_RS02470 are separated by 141 nucleotides LU632_RS02470 and prfC are separated by 222 nucleotides
LU632_RS02455: LU632_RS02455 - DDE-type integrase/transposase/recombinase, at 488,634 to 488,976
_RS02455
LU632_RS02460: LU632_RS02460 - IS481 family transposase, at 488,958 to 489,500
_RS02460
LU632_RS02465: LU632_RS02465 - IS256 family transposase, at 489,777 to 490,985
_RS02465
LU632_RS02470: LU632_RS02470 - DinI family protein, at 491,127 to 491,377
_RS02470
LU632_RS02475: prfC - peptide chain release factor 3, at 491,600 to 493,189
prfC
Position (kb) 489
490
491 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 488.833 kb on - strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.872 kb on + strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 488.873 kb on - strand, within LU632_RS02455 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.055 kb on - strand, within LU632_RS02460 at 489.138 kb on + strand, within LU632_RS02460 at 489.247 kb on - strand, within LU632_RS02460 at 489.248 kb on + strand, within LU632_RS02460 at 489.248 kb on + strand, within LU632_RS02460 at 489.249 kb on - strand, within LU632_RS02460 at 489.285 kb on - strand, within LU632_RS02460 at 489.360 kb on + strand, within LU632_RS02460 at 489.506 kb on + strand at 489.507 kb on - strand at 489.525 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.527 kb on + strand at 489.528 kb on - strand at 489.528 kb on - strand at 489.693 kb on + strand at 489.693 kb on + strand at 489.764 kb on - strand at 490.446 kb on - strand, within LU632_RS02465 at 491.035 kb on + strand at 491.105 kb on - strand at 491.105 kb on - strand at 491.133 kb on - strand at 491.134 kb on + strand at 491.151 kb on - strand at 491.185 kb on + strand, within LU632_RS02470 at 491.185 kb on + strand, within LU632_RS02470 at 491.185 kb on + strand, within LU632_RS02470 at 491.263 kb on + strand, within LU632_RS02470 at 491.263 kb on + strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.335 kb on + strand, within LU632_RS02470 at 491.377 kb on + strand at 491.378 kb on - strand at 491.481 kb on - strand at 491.485 kb on + strand at 491.539 kb on + strand at 491.539 kb on + strand at 491.539 kb on + strand at 491.539 kb on - strand at 491.540 kb on - strand at 491.540 kb on - strand at 491.540 kb on - strand at 491.573 kb on + strand at 491.583 kb on + strand at 491.583 kb on + strand at 491.584 kb on - strand at 491.594 kb on + strand at 491.595 kb on - strand at 491.716 kb on + strand at 491.893 kb on + strand, within prfC at 491.893 kb on + strand, within prfC at 491.894 kb on - strand, within prfC at 491.894 kb on - strand, within prfC
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 488,833 - LU632_RS02455 0.58 +0.2 488,872 + LU632_RS02455 0.69 -1.1 488,872 + LU632_RS02455 0.69 -0.3 488,872 + LU632_RS02455 0.69 +0.7 488,873 - LU632_RS02455 0.70 +0.0 488,873 - LU632_RS02455 0.70 +1.5 488,873 - LU632_RS02455 0.70 +0.3 488,873 - LU632_RS02455 0.70 +2.8 488,873 - LU632_RS02455 0.70 +1.2 489,055 - LU632_RS02460 0.18 -0.2 489,055 - LU632_RS02460 0.18 -0.1 489,055 - LU632_RS02460 0.18 +0.6 489,055 - LU632_RS02460 0.18 +0.0 489,138 + LU632_RS02460 0.33 +0.7 489,247 - LU632_RS02460 0.53 -0.4 489,248 + LU632_RS02460 0.53 +0.7 489,248 + LU632_RS02460 0.53 -0.3 489,249 - LU632_RS02460 0.54 -0.5 489,285 - LU632_RS02460 0.60 -1.4 489,360 + LU632_RS02460 0.74 +2.3 489,506 + +0.1 489,507 - +0.4 489,525 + +2.3 489,527 + +1.5 489,527 + +0.9 489,527 + -0.1 489,527 + -0.3 489,528 - -0.7 489,528 - +0.8 489,693 + +0.4 489,693 + +2.4 489,764 - -0.2 490,446 - LU632_RS02465 0.55 -1.5 491,035 + -1.4 491,105 - -0.0 491,105 - +0.3 491,133 - -0.2 491,134 + +1.3 491,151 - -0.3 491,185 + LU632_RS02470 0.23 +0.1 491,185 + LU632_RS02470 0.23 -0.1 491,185 + LU632_RS02470 0.23 +0.7 491,263 + LU632_RS02470 0.54 -0.1 491,263 + LU632_RS02470 0.54 -2.1 491,264 - LU632_RS02470 0.55 +3.3 491,264 - LU632_RS02470 0.55 -0.9 491,264 - LU632_RS02470 0.55 -1.3 491,264 - LU632_RS02470 0.55 -0.1 491,335 + LU632_RS02470 0.83 -1.7 491,377 + +0.0 491,378 - +0.6 491,481 - -1.0 491,485 + -0.2 491,539 + +0.1 491,539 + +0.1 491,539 + -1.9 491,539 - +1.9 491,540 - -0.2 491,540 - -0.7 491,540 - -0.8 491,573 + -1.0 491,583 + -1.7 491,583 + -0.5 491,584 - -0.4 491,594 + +0.1 491,595 - +3.1 491,716 + -1.3 491,893 + prfC LU632_RS02475 0.18 -0.4 491,893 + prfC LU632_RS02475 0.18 -0.1 491,894 - prfC LU632_RS02475 0.18 +0.3 491,894 - prfC LU632_RS02475 0.18 +2.5
Or see this region's nucleotide sequence