Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02095

Experiment: plant=Cucumber; plant sample=CP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysQ and LU632_RS02090 are separated by 41 nucleotidesLU632_RS02090 and LU632_RS02095 are separated by 303 nucleotidesLU632_RS02095 and LU632_RS02100 are separated by 121 nucleotides LU632_RS02085: cysQ - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 409,878 to 410,618 cysQ LU632_RS02090: LU632_RS02090 - YtfJ family protein, at 410,660 to 411,242 _RS02090 LU632_RS02095: LU632_RS02095 - DUF1107 domain-containing protein, at 411,546 to 411,752 _RS02095 LU632_RS02100: LU632_RS02100 - hemolysin family protein, at 411,874 to 413,205 _RS02100 Position (kb) 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 410.566 kb on - strandat 410.566 kb on - strandat 410.566 kb on - strandat 410.791 kb on + strand, within LU632_RS02090at 410.855 kb on - strand, within LU632_RS02090at 410.897 kb on - strand, within LU632_RS02090at 411.002 kb on + strand, within LU632_RS02090at 411.043 kb on + strand, within LU632_RS02090at 411.124 kb on - strand, within LU632_RS02090at 411.168 kb on + strand, within LU632_RS02090at 411.171 kb on - strand, within LU632_RS02090at 411.263 kb on + strandat 411.330 kb on - strandat 411.330 kb on - strandat 411.339 kb on + strandat 411.370 kb on + strandat 411.382 kb on + strandat 411.383 kb on - strandat 411.468 kb on + strandat 411.468 kb on + strandat 411.584 kb on + strand, within LU632_RS02095at 411.631 kb on + strand, within LU632_RS02095at 411.632 kb on - strand, within LU632_RS02095at 411.693 kb on + strand, within LU632_RS02095at 411.694 kb on - strand, within LU632_RS02095at 411.776 kb on - strandat 411.805 kb on + strandat 411.805 kb on + strandat 411.818 kb on - strandat 411.846 kb on - strandat 411.848 kb on + strandat 411.849 kb on - strandat 411.872 kb on - strandat 411.872 kb on - strandat 411.904 kb on - strandat 411.962 kb on + strandat 411.963 kb on - strandat 411.980 kb on - strandat 412.033 kb on - strand, within LU632_RS02100at 412.033 kb on - strand, within LU632_RS02100at 412.036 kb on + strand, within LU632_RS02100at 412.036 kb on + strand, within LU632_RS02100at 412.041 kb on + strand, within LU632_RS02100at 412.042 kb on - strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.043 kb on + strand, within LU632_RS02100at 412.044 kb on - strand, within LU632_RS02100at 412.044 kb on - strand, within LU632_RS02100at 412.044 kb on - strand, within LU632_RS02100at 412.044 kb on - strand, within LU632_RS02100at 412.044 kb on - strand, within LU632_RS02100at 412.070 kb on + strand, within LU632_RS02100at 412.070 kb on + strand, within LU632_RS02100at 412.070 kb on + strand, within LU632_RS02100at 412.115 kb on - strand, within LU632_RS02100at 412.241 kb on - strand, within LU632_RS02100at 412.371 kb on + strand, within LU632_RS02100at 412.375 kb on + strand, within LU632_RS02100at 412.375 kb on + strand, within LU632_RS02100at 412.375 kb on + strand, within LU632_RS02100at 412.375 kb on + strand, within LU632_RS02100at 412.384 kb on - strand, within LU632_RS02100at 412.412 kb on - strand, within LU632_RS02100at 412.419 kb on + strand, within LU632_RS02100at 412.430 kb on + strand, within LU632_RS02100at 412.440 kb on + strand, within LU632_RS02100at 412.441 kb on - strand, within LU632_RS02100at 412.441 kb on - strand, within LU632_RS02100at 412.458 kb on + strand, within LU632_RS02100at 412.664 kb on + strand, within LU632_RS02100at 412.665 kb on - strand, within LU632_RS02100at 412.665 kb on - strand, within LU632_RS02100at 412.665 kb on - strand, within LU632_RS02100at 412.665 kb on - strand, within LU632_RS02100at 412.680 kb on + strand, within LU632_RS02100at 412.680 kb on + strand, within LU632_RS02100at 412.680 kb on + strand, within LU632_RS02100at 412.681 kb on - strand, within LU632_RS02100at 412.681 kb on - strand, within LU632_RS02100at 412.684 kb on - strand, within LU632_RS02100at 412.684 kb on - strand, within LU632_RS02100at 412.725 kb on + strand, within LU632_RS02100

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA
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410,566 - +2.5
410,566 - -0.8
410,566 - -2.2
410,791 + LU632_RS02090 0.22 +0.2
410,855 - LU632_RS02090 0.33 -0.6
410,897 - LU632_RS02090 0.41 +1.9
411,002 + LU632_RS02090 0.59 +0.1
411,043 + LU632_RS02090 0.66 +1.8
411,124 - LU632_RS02090 0.80 +0.1
411,168 + LU632_RS02090 0.87 -1.0
411,171 - LU632_RS02090 0.88 +1.3
411,263 + +1.2
411,330 - +2.0
411,330 - -0.0
411,339 + +0.4
411,370 + -0.6
411,382 + -1.0
411,383 - -2.0
411,468 + -2.2
411,468 + -0.8
411,584 + LU632_RS02095 0.18 +0.7
411,631 + LU632_RS02095 0.41 -0.5
411,632 - LU632_RS02095 0.42 -0.6
411,693 + LU632_RS02095 0.71 -1.0
411,694 - LU632_RS02095 0.71 -1.0
411,776 - +0.5
411,805 + +0.3
411,805 + -0.0
411,818 - -0.0
411,846 - +0.4
411,848 + -1.1
411,849 - -0.8
411,872 - -2.2
411,872 - +1.3
411,904 - +0.4
411,962 + -1.0
411,963 - -2.0
411,980 - -1.0
412,033 - LU632_RS02100 0.12 -1.6
412,033 - LU632_RS02100 0.12 -1.9
412,036 + LU632_RS02100 0.12 +2.3
412,036 + LU632_RS02100 0.12 -1.0
412,041 + LU632_RS02100 0.13 -1.2
412,042 - LU632_RS02100 0.13 -0.5
412,043 + LU632_RS02100 0.13 +0.1
412,043 + LU632_RS02100 0.13 -2.1
412,043 + LU632_RS02100 0.13 +0.4
412,043 + LU632_RS02100 0.13 -1.8
412,043 + LU632_RS02100 0.13 -1.7
412,043 + LU632_RS02100 0.13 -1.8
412,043 + LU632_RS02100 0.13 -1.7
412,043 + LU632_RS02100 0.13 -0.6
412,043 + LU632_RS02100 0.13 -2.6
412,043 + LU632_RS02100 0.13 -1.9
412,043 + LU632_RS02100 0.13 -1.1
412,043 + LU632_RS02100 0.13 +0.5
412,043 + LU632_RS02100 0.13 -0.0
412,044 - LU632_RS02100 0.13 -0.9
412,044 - LU632_RS02100 0.13 -1.3
412,044 - LU632_RS02100 0.13 -0.8
412,044 - LU632_RS02100 0.13 -0.5
412,044 - LU632_RS02100 0.13 -1.6
412,070 + LU632_RS02100 0.15 -1.6
412,070 + LU632_RS02100 0.15 -1.3
412,070 + LU632_RS02100 0.15 -1.1
412,115 - LU632_RS02100 0.18 -1.9
412,241 - LU632_RS02100 0.28 -0.5
412,371 + LU632_RS02100 0.37 -1.2
412,375 + LU632_RS02100 0.38 -1.8
412,375 + LU632_RS02100 0.38 +1.5
412,375 + LU632_RS02100 0.38 -0.7
412,375 + LU632_RS02100 0.38 -1.8
412,384 - LU632_RS02100 0.38 -2.8
412,412 - LU632_RS02100 0.40 -0.8
412,419 + LU632_RS02100 0.41 -0.8
412,430 + LU632_RS02100 0.42 -1.2
412,440 + LU632_RS02100 0.42 -1.5
412,441 - LU632_RS02100 0.43 -2.4
412,441 - LU632_RS02100 0.43 -1.0
412,458 + LU632_RS02100 0.44 -1.0
412,664 + LU632_RS02100 0.59 -1.1
412,665 - LU632_RS02100 0.59 +0.5
412,665 - LU632_RS02100 0.59 -3.6
412,665 - LU632_RS02100 0.59 -0.8
412,665 - LU632_RS02100 0.59 -0.3
412,680 + LU632_RS02100 0.61 -0.3
412,680 + LU632_RS02100 0.61 -0.7
412,680 + LU632_RS02100 0.61 -1.5
412,681 - LU632_RS02100 0.61 -2.3
412,681 - LU632_RS02100 0.61 -2.4
412,684 - LU632_RS02100 0.61 -1.0
412,684 - LU632_RS02100 0.61 -1.0
412,725 + LU632_RS02100 0.64 -1.8

Or see this region's nucleotide sequence