Experiment: plant=Cucumber; plant sample=CP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hflC and LU632_RS02075 are separated by 481 nucleotides LU632_RS02075 and LU632_RS02080 are separated by 146 nucleotides LU632_RS02080 and cysQ are separated by 312 nucleotides
LU632_RS02070: hflC - protease modulator HflC, at 407,178 to 408,188
hflC
LU632_RS02075: LU632_RS02075 - transposase, at 408,670 to 409,005
_RS02075
LU632_RS02080: LU632_RS02080 - hypothetical protein, at 409,152 to 409,565
_RS02080
LU632_RS02085: cysQ - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 409,878 to 410,618
cysQ
Position (kb) 408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 407.847 kb on + strand, within hflC at 408.057 kb on + strand, within hflC at 408.058 kb on - strand, within hflC at 408.065 kb on + strand, within hflC at 408.179 kb on + strand at 408.186 kb on + strand at 408.187 kb on - strand at 408.222 kb on + strand at 408.223 kb on - strand at 408.314 kb on + strand at 408.337 kb on + strand at 408.347 kb on + strand at 408.348 kb on - strand at 408.402 kb on + strand at 408.425 kb on + strand at 408.425 kb on + strand at 408.425 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.426 kb on - strand at 408.557 kb on + strand at 408.557 kb on + strand at 408.558 kb on - strand at 408.581 kb on - strand at 408.600 kb on + strand at 408.659 kb on - strand at 408.705 kb on + strand, within LU632_RS02075 at 408.878 kb on + strand, within LU632_RS02075 at 408.878 kb on + strand, within LU632_RS02075 at 408.956 kb on - strand, within LU632_RS02075 at 409.065 kb on - strand at 409.068 kb on + strand at 409.069 kb on - strand at 409.069 kb on - strand at 409.069 kb on - strand at 409.098 kb on - strand at 409.106 kb on + strand at 409.130 kb on + strand at 409.138 kb on - strand at 409.165 kb on - strand at 409.221 kb on - strand, within LU632_RS02080 at 409.223 kb on - strand, within LU632_RS02080 at 409.223 kb on - strand, within LU632_RS02080 at 409.223 kb on - strand, within LU632_RS02080 at 409.272 kb on - strand, within LU632_RS02080 at 409.315 kb on - strand, within LU632_RS02080 at 409.335 kb on + strand, within LU632_RS02080 at 409.335 kb on + strand, within LU632_RS02080 at 409.335 kb on + strand, within LU632_RS02080 at 409.336 kb on - strand, within LU632_RS02080 at 409.336 kb on - strand, within LU632_RS02080 at 409.498 kb on + strand, within LU632_RS02080 at 409.498 kb on + strand, within LU632_RS02080 at 409.499 kb on - strand, within LU632_RS02080 at 409.560 kb on + strand at 409.561 kb on - strand at 409.561 kb on - strand at 409.607 kb on - strand at 409.639 kb on - strand at 409.704 kb on - strand at 409.833 kb on + strand at 409.833 kb on + strand at 409.834 kb on - strand at 409.834 kb on - strand at 409.838 kb on - strand at 409.838 kb on - strand at 409.860 kb on + strand at 409.860 kb on + strand at 409.861 kb on - strand at 409.861 kb on - strand at 409.933 kb on + strand at 409.933 kb on + strand at 409.934 kb on - strand at 409.935 kb on + strand at 409.935 kb on + strand at 409.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Cucumber; plant sample=CP3; plant location=NA remove 407,847 + hflC LU632_RS02070 0.66 -2.3 408,057 + hflC LU632_RS02070 0.87 +1.5 408,058 - hflC LU632_RS02070 0.87 -1.3 408,065 + hflC LU632_RS02070 0.88 -2.8 408,179 + +0.4 408,186 + -0.1 408,187 - -0.2 408,222 + -1.4 408,223 - -1.8 408,314 + -0.4 408,337 + -1.1 408,347 + +1.0 408,348 - +0.5 408,402 + +1.5 408,425 + -1.6 408,425 + -0.4 408,425 - +0.2 408,426 - +0.6 408,426 - +0.0 408,426 - -1.0 408,426 - -0.1 408,426 - +2.4 408,426 - -0.6 408,557 + +0.4 408,557 + +0.4 408,558 - +0.7 408,581 - +0.1 408,600 + +1.2 408,659 - -0.1 408,705 + LU632_RS02075 0.10 +0.9 408,878 + LU632_RS02075 0.62 +1.5 408,878 + LU632_RS02075 0.62 +0.3 408,956 - LU632_RS02075 0.85 -0.4 409,065 - -1.8 409,068 + -0.4 409,069 - +1.8 409,069 - +0.0 409,069 - -1.3 409,098 - -0.4 409,106 + -1.3 409,130 + +1.7 409,138 - -1.4 409,165 - -0.3 409,221 - LU632_RS02080 0.17 +0.3 409,223 - LU632_RS02080 0.17 +0.1 409,223 - LU632_RS02080 0.17 -0.4 409,223 - LU632_RS02080 0.17 +1.1 409,272 - LU632_RS02080 0.29 -0.7 409,315 - LU632_RS02080 0.39 +0.7 409,335 + LU632_RS02080 0.44 -0.1 409,335 + LU632_RS02080 0.44 -1.8 409,335 + LU632_RS02080 0.44 +0.1 409,336 - LU632_RS02080 0.44 +1.3 409,336 - LU632_RS02080 0.44 -0.2 409,498 + LU632_RS02080 0.84 +0.3 409,498 + LU632_RS02080 0.84 -0.3 409,499 - LU632_RS02080 0.84 +0.1 409,560 + +1.2 409,561 - -0.2 409,561 - -0.2 409,607 - +0.5 409,639 - -1.1 409,704 - -0.8 409,833 + -1.7 409,833 + +0.0 409,834 - -1.5 409,834 - +0.8 409,838 - +0.5 409,838 - -0.8 409,860 + +0.1 409,860 + -1.1 409,861 - -1.9 409,861 - +0.5 409,933 + -1.5 409,933 + -1.1 409,934 - +0.3 409,935 + -2.3 409,935 + -1.1 409,936 - +1.2
Or see this region's nucleotide sequence